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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtatacactacacacatgtgcacggcggcttcttcagttgaaagcaagaagaagtgtcatgctcatgcatgcatgcatggatgttgatctgctgacagactgacgtacgcgcgcgcgcgcagGACCCGCACCGGGGGAACTGGTGGCTGCAGCTGGGGTCGGGCCCGCTGGTGGGGTACTGGCCGTCGCTCCTGTTCACGCACCTGGGCGCCCACGCCGACA

Basic information

species Zea mays
transcript GRMZM2G162928_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162928_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g07570.1 (Oryza sativa), 3'ss of exon 6
gtaaggtatacactacacacatgtgcacggcggcttcttcagttgaaagcaagaagaagtgtcatgctcatgcatgcatgcatggatgttgatctgctgacagactgacgtacgcgcgcgcgcgcagGACCCGCACCGGGGGAACTGGTGGCTGCAGCTGGGGTCGGGCCCGCTGGTGGGGTACTGGCCGTCGCTCCTGTTCACGCACCTGGGCGCCCACGCCGACA
                       || || |    |     | || | ||  | || || | | |  ||  || ||| |   ||  ||  | ||    |  || ||  |  |   ||   | | | ||||||| |  |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||  ||| ||||| |||||||||| ||||||| |||
--------------------gactgaactgaaattcagaaaattaacag--aaaaaaaatctgaaactt-tggatgaaaagatttatactaattaaatttca-acgaatttggccg---gtgtgtagGACCCACGTCGGGGGCACTGGTGGCTGCAGCTGGGGTCGGGCCCACTGGTGGGGTACTGGCCGTCGTCCCTCTTCACCCACCTGGGCGGCCACGCCAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcatgcatggatgttgatctgctgacagactgacgtacgcgcgcgcgcgcagGACCCGCACCGGGGGAACTGGTGGCTGCAGCTGGGGTCGGGCCCGCTGGTGGGGTACTGGCCGTCGCTCCTGTTCACGCACCTGGGCGCCCACGCCGACA
                              gactgac  putative branch site (score: 2)