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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggagctttaaatatcgattatgtgcatagggatttctgttttatctatacctttctgttttatcgtcattgttttccttgtgaatttatgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCACCTGAGTCTCCGG

Basic information

species Zea mays
transcript GRMZM2G162292_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162292_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g38970.1 (Oryza sativa), 3'ss of exon 3
-------ttggagctttaaatatcgattatgtgcatagggatttctgttttatctatacctttctgttttatcgtcattgttttccttgtgaatttatgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCA---CCTGAGTCTCCGG
       |  ||||||   ||  |  |  ||   ||| | | |  | |   ||  ||   | | | |  || | |  ||  |||  ||||||| || ||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | || |||||||||  | ||   || ||||| |   
gagcgattctgagctt--gatcaccgtgttgcttatatgtagtgatatcacattcat---tatttctcctaacatgctt--ttttattgtgaaattctgttttgcagTTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACCCACAACCAGAGTCCC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20507385|gb|BQ279606.1|BQ279606
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|148946992|gb|EC892286.2|EC892286
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|76281801|gb|DV021369.1|DV021369
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|5005737|gb|AI711799.1|AI711799
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|26456562|gb|CA828145.1|CA828145
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|74244398|gb|DT652312.1|DT652312
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|148955405|gb|EC900974.2|EC900974
EST:     CAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACCA-CAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACAC-AGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|67017745|gb|CO446494.1|CO446494
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|26456759|gb|CA828342.1|CA828342
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|211397399|gb|FL138819.1|FL138819
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|44900736|gb|CK827281.1|CK827281
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|76288413|gb|DV027981.1|DV027981
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|76281802|gb|DV021370.1|DV021370
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAAAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|78119378|gb|DV537762.1|DV537762
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|5871547|gb|AW018018.1|AW018018
EST:     TGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: TGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|4835058|gb|AI670284.1|AI670284
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|113701452|gb|EE678956.1|EE678956
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|20803170|gb|BQ294220.1|BQ294220
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|211458578|gb|FL265864.1|FL265864
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|6653903|gb|AW267308.1|AW267308
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACCCAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|5915502|gb|AW053143.1|AW053143
EST:     TGAGAACACAG-AGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: TGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|40303447|gb|CK347834.1|CK347834
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|148967884|gb|EE019185.2|EE019185
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|211023562|gb|FL443711.1|FL443711
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|20803169|gb|BQ294219.1|BQ294219
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|78080266|gb|DV508678.1|DV508678
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|74239046|gb|DT646960.1|DT646960
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|76288414|gb|DV027982.1|DV027982
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|78105735|gb|DV524153.1|DV524153
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|74239047|gb|DT646961.1|DT646961
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|78083904|gb|DV512297.1|DV512297
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|76011147|gb|DT938317.1|DT938317
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|78080265|gb|DV508677.1|DV508677
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|78545041|gb|DV622539.1|DV622539
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
EST: gi|148967883|gb|EE019184.2|EE019184
EST:     CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAG                         TTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA
genomic: CCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 64

GTTGGGTGAATCGCTTTGCCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCACCTGAGTCTCCGG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 58

GTTGGGTGAATCGCTTTGCCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCACCTGAGTCTCCGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 105

GTTGGGTGAATCGCTTTGCCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCACCTGAGTCTCCGG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 61

GTTGGGTGAATCGCTTTGCCAATGCCGGTGATACTGCTGTGGTTGTTGCTGAGAACACAGCAGTTAAGgtaatttcag ... tgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCACCTGAGTCTCCGG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctatacctttctgttttatcgtcattgttttccttgtgaatttatgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCACCTGAGTCTCCGG
                                     tgaatttatgtatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttggagctttaaatatcgattatgtgcatagggatttctgttttatctatacctttctgttttatcgtcattgttttccttgtgaatttatgtattgcagTTCAGGCAGGCTAAAACAGAAATCGTGAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGACTTCCAAAAATCAAGCCTCACCTGAGTCTCCGG

-tggagct
- - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttgtg