1 5' 3' | 2 5' 3' | 3 5' 3' |
gtccgtgatttgtggtctttcaggaattccttgccccaaaatttatcttgttttctttgatttcatgtattttgtttattgtgcagGGTTTATGTTAGTTCTATTGAGGAAATAGGATTTCATTTGAGCAGATACATGATGTCAAGCTGACTTAGCAGAACCCTTCTGTGGTTGGATGCTGGTTGC
species | Zea mays |
transcript | GRMZM2G161854_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTTGACTGTGGCACCTCTTCACCGGTGATATTCCCTTGATATCACTAG GGTTTATGTCAGTTCTGTTGAGGAAATAGGATTTCATTTGAGCAGATACATEST: gi|7844509|gb|AW787731.1|AW787731
genomic: TTGTTGACTGTGGCGCCTCTTCACCGGTGATATTCC-TTGATATCACTAGgtccgtgatt ... tattgtgcagGGTTTATGTTAGTTCTATTGAGGAAATAGGATTTCATTTGAGCAGATACAT
EST: TTTGTTGACTGTGGCACCTCTTCACCGGTGATATTCCTTGATATCACTAG GGTTTATGTCAGTTCTGTTGAGGAAATAGGATTTCATTTGAGCAGATACAT
genomic: TTTGTTGACTGTGGCGCCTCTTCACCGGTGATATTCCTTGATATCACTAGgtccgtgatt ... tattgtgcagGGTTTATGTTAGTTCTATTGAGGAAATAGGATTTCATTTGAGCAGATACAT
tgccccaaaatttatcttgttttctttgatttcatgtattttgtttattgtgcagGGTTTATGTTAGTTCTATTGAGGAAATAGGATTTCATTTGAGCAGATACATGATGTCAAGCTGACTTAGCAGAACCCTTCTGTGGTTGGATGCTGGTTGC
ctttgat putative branch site (score: 2)
ttttgttt putative PPT
aaaatttatcttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtgatttgtggtctttcaggaattccttgccccaaaatttatcttgttttctttgatttcatgtattttgtttattgtgcagGGTTTATGTTAGTTCTATTGAGGAAATAGGATTTCATTTGAGCAGATACATGATGTCAAGCTGACTTAGCAGAACCCTTCTGTGGTTGGATGCTGGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG