1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagttatgatgtgtgtgtgtgttttcttgctttgattaatccagtcaacctaccatttgtcattctttttcatgttaggttgggttcttacatggttgttgttattattgtgcatgttaagtattgcagTTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGACCTTGCAGATCAGGTCGCTGATGTCCTCGATTTTTTCAG
species | Zea mays |
transcript | GRMZM2G161787_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAG TTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGACEST: gi|50339480|gb|CO534606.1|CO534606
genomic: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAGgtcagttatg ... agtattgcagTTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGAC
EST: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAG TTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGACEST: gi|148964676|gb|EC905957.2|EC905957
genomic: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAGgtcagttatg ... agtattgcagTTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGAC
EST: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAG TTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGACEST: gi|50328528|gb|CO523654.1|CO523654
genomic: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAGgtcagttatg ... agtattgcagTTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGAC
EST: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAG TTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGAC
genomic: TGTTGCTTCACAATTTCTGTGTGTACCACATCACACCTCAAGGGCACGAGgtcagttatg ... agtattgcagTTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGAC
ttaggttgggttcttacatggttgttgttattattgtgcatgttaagtattgcagTTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGACCTTGCAGATCAGGTCGCTGATGTCCTCGATTTTTTCAG
ttcttac putative branch site (score: 16)
ttgttgttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttatgatgtgtgtgtgtgttttcttgctttgattaatccagtcaacctaccatttgtcattctttttcatgttaggttgggttcttacatggttgttgttattattgtgcatgttaagtattgcagTTAGGAGCGGCTCCAATTTCAGCTGATGTGCATGTGCCGTCTGTCGATGACCTTGCAGATCAGGTCGCTGATGTCCTCGATTTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT