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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggttactgaatttttctggtacagacatcctcaagtactctctctgatttatagcgtttgtcattttttattccttaacgcccaaagctggaagctctggcttatgatttacctttctttgtgcttcatgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACCGGAGGTGGTGCTGTCATCCGACCAGTTAACTG

Basic information

species Zea mays
transcript GRMZM2G161566_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161566_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g51410.2 (Oryza sativa), 3'ss of exon 5
gtaatggttactgaatttttctggtacagacatcctcaagtactctctctgatttatagcgtttgtcattttttattccttaacgcccaaagctggaagctctggcttatgatttacctttctttgtgcttcatgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACCGGAGGTGGTGCTGTCATCCGACCAGTTAACTG
        || |   ||||||||   |   | ||  | |  |   |||   || | |||| |||||    || || |  | |      ||| |||  |   |||  ||||  |||  || |   | |  || |||| || |||||||| |||||||||||| ||||||| |||   |||||||||||||| || |||||||||||||| |||||||||||||||||
-------gtaatctttttttctgaatccatcttctgctaacatgatctactatct-tagcatttgtttacttgtagttatcagaaggaaaatctgaga---ctga-ttat--tttctctgtggctctcttttatgcattacagAGTAGTGTCTTGAGGGATTTGTCCTCAATGAAGCGATTAGTTGTTGCTACTGGAGGTGGTGCTGTTATCCGACCAGTTAACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13237004|gb|BG355018.1|BG355018
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|5343250|gb|AI795555.1|AI795555
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|24934599|gb|CA452817.1|CA452817
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|37392587|gb|CF633545.1|CF633545
EST:     ATTCAAAGTTCACAGCGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: ATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|30087805|gb|CB886011.1|CB886011
EST:     CTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCNCC
genomic: CTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|32164833|gb|CD670151.1|CD670151
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|32928190|gb|CF033002.1|CF033002
EST:     TTGCTCAAATATTCAAAGTTCACAGCGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|56461974|gb|CK986272.1|CK986272
EST:     TTGCTCAAATATTCAAAGTTCACAGCGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|37398941|gb|CF636791.1|CF636791
EST:     TTGCTCAAATATTCAAAGTTCACAGCGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|211307747|gb|FL198214.1|FL198214
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|60342476|gb|DN209449.1|DN209449
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|213191774|gb|FM182092.1|FM182092
EST:     TTGCTCAAATATTCAAAGTTCACAGCGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|60395600|gb|DN228470.1|DN228470
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|44900819|gb|CK827364.1|CK827364
EST:     TTGCTCAAATATTCAAAGTTCACAGCGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
EST: gi|60355769|gb|DN222742.1|DN222742
EST:     TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAG                         AGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC
genomic: TTGCTCAAATATTCAAAGTTCACAGTGAAGCCTTCTTTCGGGATAATGAGgtaatggtta ... tgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagctggaagctctggcttatgatttacctttctttgtgcttcatgccttgcagAGTAGCGTCTTGAGGGATCTGTCCTCCATGCGACGATTAGTTGTTGCCACCGGAGGTGGTGCTGTCATCCGACCAGTTAACTG
                  ttatgattta  TA-rich tract