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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaaaagttagaactgcatttctttcatataaaactacaatcttgtatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAGGTGTGATATGGCTTGATATCATTTTATTTAAGTTGGATCTAGTTTACGG

Basic information

species Zea mays
transcript GRMZM2G161418_T06
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161418_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g45410.1 (Oryza sativa), 3'ss of exon 4
gaaaaagttag-aactgcatttctttcatataaaac-tacaatcttgtatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAGGTGTGATATGGCTTGATATCATTTTATTTAAGTTGGATCTAGTTTACGG
 | |  | |   |||   | ||  |   | |  | | |    ||| | ||| |    | | || |   |   || | | | |  |     ||  | | | |||| |||||||| || ||||||||||| |||||||||||||||||||| |||                                                 
aatatggctgttaaccaaaatttctcagtgtccaccgtgatgtctggcatctatg-gtta-aattagaggtctgtttataaatcttttgtgtcctataccagGTCTGTACTGGGGCAAAGAGTGAACAACAATCCAAGCTTGCAGCAAGAAAG-------------------------------------------------

upper sequence: GRMZM2G161418_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g39070.1 (Oryza sativa), 3'ss of exon 3
gaaaaagttagaactgcatttctttcatataaaactacaatcttgtatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaat---tttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAGGTGTGATATGGCTTGATATCATTTTATTTAAGTTGGATCTAGTTTACGG
       |   |||   | ||  |   |     || |  | ||  || ||     |  |     |   ||       | || |     ||  |   || | ||||||||||||| || ||||| ||||| ||||| |||||||||||||| |||                                                 
-tttgcttgttaaccaaaatttctctgtg-ggcaccatgacctgctagca-tttgtggtggaattaaaagcatgtttataaatcttttgttgtcctttaccagGTATGTACTGGGGCAAAGAGCGAACAACAATCAAAGCTTGCAGCAAGAAAG-------------------------------------------------

upper sequence: GRMZM2G161418_T06 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G04500.1 (Glycine max), 3'ss of exon 4
gaaaaagttagaactgcatttctttcatataaaactacaatcttgtatcaaccc-atcataagtgttgtagtg----ctgaaacaagtggcccgtaatttt---ctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAGGTGTGATATGGCTTGATATCATTTTATTTAAGTTGGATCTAGTTTACGG
        |    ||      |||||    |   ||   || | ||| |   |   | ||   |  | | |||     | ||   | |      | | | |   |||||| ||||||||||| ||||||||||| ||||| ||  | ||||||||||||                                                 
--------tttgtctcttccgctttctgtaatggctcttatttggtacccttcttgtaatggtttctctcgtgaactttaaatttaattttttatgactattgactagGTTTGTACTGGAGCTAAGAGTGAACAACAATCTAAATTGGCAGCAAGGAAG-------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67021248|gb|CO449997.1|CO449997
EST:     GA-TAAGAGAACCCANA-CCACAGCACTGATATTTGCATCGGGTAAAATG                         GTATGTACTGGAGCGAAAAGTGA-CAGCA-TCCAAGCTTGCA
genomic: GAATAAGAGAACCCAAAACCACAGCACTGATATTTGCATCGGGTAAAATGgtatgtcatc ... aattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcaacccatcataagtgttgtagtgctgaaacaagtggcccgtaattttctagGTATGTACTGGAGCGAAGAGTGAACAGCAATCCAAGCTTGCAGCAAGGAAGGTGTGATATGGCTTGATATCATTTTATTTAAGTTGGATCTAGTTTACGG
                                               ttttct  CT-rich tract
                                            taattttcta  TA-rich tract