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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcgctaagacatctcatcccttatcagttatggtgtatttgtttatgatctttaaccctccttttattcaataaagTTTCTAAATCAACGGCAGTGCATTAATGTGTGGCGATTTATCCAAACTATCAATGA

Basic information

species Zea mays
transcript GRMZM2G161390_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161390_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g36740.1 (Oryza sativa), 3'ss of exon 8
----gtatgcgctaagacatctcat---cccttatcagttatggtg------tatttgtttatgat-----ctttaaccc---tccttttattcaataaagTTTCTAAATCAACGGCAGTGCATTAATGTGTGGCGATTTATCCAAACTATCAATGA
    |||    | || |||| ||||   ||||||||| |||| |||      |||   |||||||      |||||| |    | || ||  |  ||  |||||||| ||||||||||  |||| ||||||||||| |||||||| || ||||||||
gtgcgtactatcgaaaacatttcattgccccttatcaattattgtggttgtttataaatttatgagtttaactttaatctctgttctcttgattcatgtagTTTCTAGATCAACGGCAAAGCATGAATGTGTGGCGGTTTATCCACACAATCAATGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcagttatggtgtatttgtttatgatctttaaccctccttttattcaataaagTTTCTAAATCAACGGCAGTGCATTAATGTGTGGCGATTTATCCAAACTATCAATGA
                            ctttaac  putative branch site (score: 3)
                           tctttaaccctccttt  CT-rich tract
                                        ttttattcaataaa  TA-rich tract