1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggttcgaatccttcttgcatccttcgctaaactggaaaaccacacttctgttggaattcaagttacatttgctgtattgtgtatcaacataattttcgaataaggatttggttagcataagcacatatgtccttttcttttgattctcaatatctttctaattagttattgtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAGGTTTACAAAGGAATCATGGATTGTGTGAAAACAATATACAGACAAAATG
species | Zea mays |
transcript | GRMZM2G161299_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAG GTGAAAGGTGCAGTCATTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAGEST: gi|71442969|gb|DR824019.1|DR824019
genomic: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcga ... gtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
EST: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAG GTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAGEST: gi|76294060|gb|DV033628.1|DV033628
genomic: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcga ... gtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
EST: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAG GTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
genomic: TCATATGCACATACCCTCTTGATCTAGTCCGCACAAAGTTGGCTTATCAGgttggttcga ... gtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAG
tatgtccttttcttttgattctcaatatctttctaattagttattgtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAGGTTTACAAAGGAATCATGGATTGTGTGAAAACAATATACAGACAAAATG
ttctaat putative branch site (score: 2)
aatatctttctaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttcgaatccttcttgcatccttcgctaaactggaaaaccacacttctgttggaattcaagttacatttgctgtattgtgtatcaacataattttcgaataaggatttggttagcataagcacatatgtccttttcttttgattctcaatatctttctaattagttattgtctgcgcagGTGAAAGGTGCAGTCAGTGTGGGTTTCAGAGAATCTAAGCCCTCTGAACAGGTTTACAAAGGAATCATGGATTGTGTGAAAACAATATACAGACAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA