1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggaattttgaacatagccgatgatcaaaattggttattttaatctgtggtggtcatacatatcaatgctaaccttgttttttgttctcaaattgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCTGATGCTTGCCGGGA
species | Zea mays |
transcript | GRMZM2G160842_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCEST: gi|149009441|gb|EE041457.2|EE041457
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... attgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTC
EST: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCCTCGACCG ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCCGCTEST: gi|78106504|gb|DV524922.1|DV524922
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... attgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
EST: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... attgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
gtggtggtcatacatatcaatgctaaccttgttttttgttctcaaattgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCTGATGCTTGCCGGGA
tgctaac putative branch site (score: 1)
ttgtctc putative PPT
ttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaattttgaacatagccgatgatcaaaattggttattttaatctgtggtggtcatacatatcaatgctaaccttgttttttgttctcaaattgtctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCTGATGCTTGCCGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT