1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtacaacctgcccatggccatggccattctagcaaccgatagccaccatctgttcagtatagcgtagcatggcacttgaggctagcgtgtgcattactggacttttttgtttgtttgtttgtttgtttgattgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCACCTGTCTACGCCGAAATGTCGCAGACGTACCCTCAGCTCATGTTCCTGA
species | Zea mays |
transcript | GRMZM2G159145_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAATCC TTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCAEST: gi|211193234|gb|FL445825.1|FL445825
genomic: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACCgtgagtacaa ... attgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCA
EST: AAGAGGACTGGGACCAAAGAATTGCGGAGGCAAACAAGGATGGGAAAACC GTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCAEST: gi|91878181|gb|EB408138.1|EB408138
genomic: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACCgtgagtacaa ... attgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCA
EST: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACC GTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCAEST: gi|20506687|gb|BQ279300.1|BQ279300
genomic: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACCgtgagtacaa ... attgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCA
EST: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACC GTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCAEST: gi|60395087|gb|DN227956.1|DN227956
genomic: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACCgtgagtacaa ... attgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCA
EST: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACC GTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCAEST: gi|91878182|gb|EB408139.1|EB408139
genomic: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACCgtgagtacaa ... attgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCA
EST: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACC GTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCA
genomic: AAGAGGACTGGGACCAAAGAATTGCCGAGGCAAACAAGGATGGGAAAACCgtgagtacaa ... attgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCA
gcgtgtgcattactggacttttttgtttgtttgtttgtttgtttgattgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCACCTGTCTACGCCGAAATGTCGCAGACGTACCCTCAGCTCATGTTCCTGA
gtttgat putative branch site (score: 74)
ttttttgtttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtacaacctgcccatggccatggccattctagcaaccgatagccaccatctgttcagtatagcgtagcatggcacttgaggctagcgtgtgcattactggacttttttgtttgtttgtttgtttgtttgattgtactagGTGGTTGCAAACTTCAGCGCTTCCTGGTGTGGGCCGTGCCGTGTCATCGCACCTGTCTACGCCGAAATGTCGCAGACGTACCCTCAGCTCATGTTCCTGA
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