1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttcttgtattcgtgtactttgattgagataatgatggatgttatcctatctccatgcgtaccgttgaccccattttgccctgttttgtgttatcttcagGAGTTGGAAAATATACTTTTCTCTGAGCCTCTTCCGGAACCCAAGTACCAACTGAGGAGAACCGGCTCAGCGACTTTCTGATTGTATGCAGAATATCTTG
species | Zea mays |
transcript | GRMZM2G159134_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGTTTCTCGATTAGAAGAGGAGAATAAGAAGCTAACCACGTTAAAG GAGTTGGAAAATATACTTTTCTTTGAGCCTCTTCCGGAACCCAAGTACCAAEST: gi|78125373|gb|DV543757.1|DV543757
genomic: ACAAGGTTTCTCGATTAGAAGAGGAGAATAAGAAGCTAACCACGTTAAAGgtactttagt ... ttatcttcagGAGTTGGAAAATATACTTTTCTCTGAGCCTCTTCCGGAACCCAAGTACCAA
EST: ACAAGGTTTCTCGATTAGAAGAGGAGAATAAGAAGCTAACCACGTTAAAG GAGTTGGAAAATATACTTTTCTTTGAGCCTCTTCCGGAACCCAAGTACCAAEST: gi|110960234|gb|EE180286.1|EE180286
genomic: ACAAGGTTTCTCGATTAGAAGAGGAGAATAAGAAGCTAACCACGTTAAAGgtactttagt ... ttatcttcagGAGTTGGAAAATATACTTTTCTCTGAGCCTCTTCCGGAACCCAAGTACCAA
EST: ACAAGGTTTCTCGATTAGAAGAGGAGAATAAGAAGCTAACCACGTTAAAG GAGTTGGAAAATATACTTTTCTTTGAGCCTCTTCCGGAACCCAAGTACCAA
genomic: ACAAGGTTTCTCGATTAGAAGAGGAGAATAAGAAGCTAACCACGTTAAAGgtactttagt ... ttatcttcagGAGTTGGAAAATATACTTTTCTCTGAGCCTCTTCCGGAACCCAAGTACCAA
cctatctccatgcgtaccgttgaccccattttgccctgttttgtgttatcttcagGAGTTGGAAAATATACTTTTCTCTGAGCCTCTTCCGGAACCCAAGTACCAACTGAGGAGAACCGGCTCAGCGACTTTCTGATTGTATGCAGAATATCTTG
cgttgac putative branch site (score: 21)
ttatcttc putative PPT
ttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttgtattcgtgtactttgattgagataatgatggatgttatcctatctccatgcgtaccgttgaccccattttgccctgttttgtgttatcttcagGAGTTGGAAAATATACTTTTCTCTGAGCCTCTTCCGGAACCCAAGTACCAACTGAGGAGAACCGGCTCAGCGACTTTCTGATTGTATGCAGAATATCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
gttcttg
- - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - -tccatgc