Sequence
atgc intronic sequence ATGC exonic sequence...aggatagtatatctgtattgctgtggtcttcttttctataattcagatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctcctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G158818_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g50970.1 (Oryza sativa), 3'ss of exon 5
----------------aggata--gtatatctgtattgctgtggtcttcttttctataattcagatgtagttgt--cttttgaactgtttgtagaacatcgtgttgcc-tcctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
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gtgcttctgtttacaaaagatgttgttcatttatttaatactggatgcagttgttgcattctttgtggcggtgtacctgctgaattgtt-gttaaacatttcgtttccctcctatttatagCTATTGCACTCTCTGAGGATCACAAGCCAAATAGAAGCGATGAGAGGAAGCGAATTGAGAGTGCTGGTGGGGTTGTTATGTGGGCTG
upper sequence: GRMZM2G158818_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA13G08090.2 (Glycine max), 3'ss of exon 5
aggatagtatatctgtattgctgtggtc--ttcttttctataattcagatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctccttttt----gcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
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------gtccttgtctggtcatatgatagattttctactatagttccacttgaatacattttagaaataagaatgatatcttgaattaattttttttttttggcagCAATTGCTCTCTCTGAGGATCATAAGCCAAATAGAAGTGATGAGCGGAAGAGAATTGAGAATGCTGGTGGTGTTGTCATGTGGGCAG
upper sequence: GRMZM2G158818_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA14G31890.1 (Glycine max), 3'ss of exon 6
aggatagtatatctgtattgctgtggtcttcttttctataattcagatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctccttttt-----gcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
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-----tccttgtctggtcatatgataaattttctcctacagttccatttgaatacattttggaaataagattggtatcttgaattaattttttttattttggcagCAAATGCTCTCTCTGAGGATCATAAACCAAATAGAAGTGATGAGCGGAAGAGAATCGAGAATGCTGGTGGTGTTGTCATGTGGGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|40336318|gb|CK370388.1|CK370388EST: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
genomic: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST:
gi|37393001|gb|CF633755.1|CF633755EST: TGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
genomic: TGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctcctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
tgttgcctccttttt CT-rich tract
ttttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aggatagtatatctgtattgctgtggtcttcttttctataattcagatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctcctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA