1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aggatagtatatctgtattgctgtggtcttcttttctataattcagatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctcctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
species | Zea mays |
transcript | GRMZM2G158818_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACEST: gi|211342700|gb|FL234317.1|FL234317
genomic: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST: TTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACEST: gi|9733204|gb|BE511956.1|BE511956
genomic: TTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACEST: gi|101388859|gb|EB816411.1|EB816411
genomic: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST: CAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACEST: gi|19058198|gb|BM736865.1|BM736865
genomic: CAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACEST: gi|211345077|gb|FL234318.1|FL234318
genomic: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST: TTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACEST: gi|20300882|gb|BQ163825.1|BQ163825
genomic: TTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACEST: gi|61119350|gb|DN560311.1|DN560311
genomic: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
EST: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAG CTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
genomic: CGTGGCAAATGTTGGAGACTCAAGGGCTGTTATATCAAAGGCTGGCAAAGgtacttctat ... ctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAAC
gatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctcctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
tgttgcctccttttt CT-rich tract
ttttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggatagtatatctgtattgctgtggtcttcttttctataattcagatgtagttgtcttttgaactgtttgtagaacatcgtgttgcctcctttttgcagCTATTGCGCTCTCTGAAGATCACAAGCCGAACAGAAGTGATGAGAGGAAACGAATCGAGAGTGCTGGTGGAATAGTTATGTGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - attgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc