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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttatagcatgccttcagcaacagggttcatgcttgtttcctctactgttgcaatgatccaatggtttagtatgaatacagtttgttttttattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT

Basic information

species Zea mays
transcript GRMZM2G158766_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158766_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 3
--tttatagcatgccttcagcaacagggttcatgcttgtttcctctactgttgcaatgatccaatggtttagtatgaatacagtttgttttttattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT
  ||| |  ||    |   |      |    ||  ||| |   | |    |     |||| | |    |  || |   || |   ||  ||| |||   |||| || || || |||||||| ||||| || ||||||||||||||  ||||||||||| |||| |||||||| || || || |||
tgtttgtgtcaatagtgtcgtgttctgaagtatttttggtcagtttgaaatcaagttgattctact-ctaggtttttgtatatcatgactttgatttt-cagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT

upper sequence: GRMZM2G158766_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G09570.1 (Glycine max), 3'ss of exon 3
tttatagcatgccttcagcaacagggttc-----atgcttgtttcctctactgttgcaatgatccaatggtttagtatgaatacagtttgttttttattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT
 || | |  || |   || | || | |       ||  ||| |   | |    |     ||||  | |   |  || |   |  |   ||  ||| |||   |||| || || || |||||||| ||||| || ||||||||||||||  ||||||||||| |||| |||||||| || || || |||
-ttgt-gtgtgtcaatagtatcatgttctgaagtatttttggtcagtttgaaatcaagttgatttact--ctaggtttttgtttatcatgactttgatttt-cagAAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211059847|gb|FL039111.1|FL039111
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211059854|gb|FL039118.1|FL039118
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|60338388|gb|DN205361.1|DN205361
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211053906|gb|FL039090.1|FL039090
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211053896|gb|FL039080.1|FL039080
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|3191859|gb|AI001305.1|AI001305
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTNGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211059857|gb|FL039121.1|FL039121
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|60400305|gb|DN233112.1|DN233112
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211014719|gb|FL072114.1|FL072114
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACWACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211062802|gb|FL039127.1|FL039127
EST:     TGGCAATGTTGATCTGCACAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211210960|gb|FL000155.1|FL000155
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|32933498|gb|CF038310.1|CF038310
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211014717|gb|FL072112.1|FL072112
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|37383346|gb|CF628681.1|CF628681
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|213171215|gb|FM188433.1|FM188433
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|33100569|gb|CF060529.1|CF060529
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211017494|gb|FL072120.1|FL072120
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|6653858|gb|AW267263.1|AW267263
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACANCA                         AGACGACAGTTAANCAAATCGAGGACGCGTTCAAAGAATTTACTNCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|32856242|gb|CD995923.1|CD995923
EST:     TGGCAATGTTGATCTGCGCAGGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211056847|gb|FL039100.1|FL039100
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211210961|gb|FL000156.1|FL000156
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211053898|gb|FL039082.1|FL039082
EST:     TGGCAATGTTGATCTGCGCAAGAWAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211014716|gb|FL072111.1|FL072111
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|14245602|gb|BG874184.1|BG874184
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211059846|gb|FL039110.1|FL039110
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211014721|gb|FL072116.1|FL072116
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|84977205|gb|DW475627.1|DW475627
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211014722|gb|FL072117.1|FL072117
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|78090061|gb|DV518435.1|DV518435
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|32916548|gb|CF021360.1|CF021360
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGGCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211053909|gb|FL039093.1|FL039093
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGTACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|40335964|gb|CK370034.1|CK370034
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211117287|gb|FL451396.1|FL451396
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|67015900|gb|CO444649.1|CO444649
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|116813511|gb|EC855962.1|EC855962
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211062803|gb|FL039128.1|FL039128
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211056851|gb|FL039104.1|FL039104
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211017495|gb|FL072121.1|FL072121
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|32865044|gb|CF004726.1|CF004726
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGCCAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|16927531|gb|BM080600.1|BM080600
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|211056854|gb|FL039107.1|FL039107
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|9824967|gb|BE575064.1|BE575064
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTACAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
EST: gi|37387839|gb|CF631121.1|CF631121
EST:     TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACA                         AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG
genomic: TGGCAATGTTGATCTGCGCAAGAAAACCAATTACCTCCTCGTCGACAACAgtgagtaaaa ... tattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgcaatgatccaatggtttagtatgaatacagtttgttttttattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT
                                    tttgttttttattcc  CT-rich tract
                                  agtttgttttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttatagcatgccttcagcaacagggttcatgcttgtttcctctactgttgcaatgatccaatggtttagtatgaatacagtttgttttttattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT