1 5' 3' | 2 5' 3' | 3 5' 3' |
...taggaagatgtatagttatactaatcttcaatgtggtctgaactgaataattaatgatcaaaccgatgaattgtaactgatgattaatgaaatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACTGGCTGCACTCCCGCCCCAGCGCTTGCATGAACTTACTTAGACAAGCTG
species | Zea mays |
transcript | GRMZM2G158662_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|76914107|gb|DV165407.1|DV165407
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|211004228|gb|FL439467.1|FL439467
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32921447|gb|CF026259.1|CF026259
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACEST: gi|74240099|gb|DT648013.1|DT648013
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32923148|gb|CF027960.1|CF027960
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|166556876|gb|EG268032.1|EG268032
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: AGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32920320|gb|CF025132.1|CF025132
genomic: AGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|37393753|gb|CF634142.1|CF634142
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32922007|gb|CF026819.1|CF026819
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTEST: gi|32920266|gb|CF025078.1|CF025078
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACANAGAAGTEST: gi|32925031|gb|CF029843.1|CF029843
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTEST: gi|71435910|gb|DR816960.1|DR816960
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|94475869|gb|EB704827.1|EB704827
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|149069800|gb|EE158186.2|EE158186
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32922306|gb|CF027118.1|CF027118
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|149099430|gb|EE185469.2|EE185469
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|94479086|gb|EB708044.1|EB708044
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|110195779|gb|EC877676.1|EC877676
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|78116091|gb|DV534479.1|DV534479
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|37396211|gb|CF635393.1|CF635393
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|50334996|gb|CO530122.1|CO530122
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32921224|gb|CF026036.1|CF026036
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTEST: gi|32926218|gb|CF031030.1|CF031030
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACEST: gi|32923560|gb|CF028372.1|CF028372
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|71762343|gb|DR960280.1|DR960280
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|76908974|gb|DV163161.1|DV163161
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32922206|gb|CF027018.1|CF027018
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|32921938|gb|CF026750.1|CF026750
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GCTCATCACAAAGAAGTAEST: gi|86473550|gb|DY239920.1|DY239920
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|83278195|gb|DV942203.1|DV942203
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|149106207|gb|EE291900.2|EE291900
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32922666|gb|CF027478.1|CF027478
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|32828358|gb|CD968036.1|CD968036
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|50334995|gb|CO530121.1|CO530121
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32923395|gb|CF028207.1|CF028207
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTEST: gi|166556526|gb|EG173352.1|EG173352
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGT
EST: GAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32922653|gb|CF027465.1|CF027465
genomic: GAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|32922165|gb|CF026977.1|CF026977
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|71440273|gb|DR821323.1|DR821323
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|149094894|gb|EE180473.2|EE180473
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTTTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|71772788|gb|DR970713.1|DR970713
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|6194601|gb|AW146705.1|AW146705
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGGACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACEST: gi|32922371|gb|CF027183.1|CF027183
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCAC
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTAEST: gi|32921485|gb|CF026297.1|CF026297
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
EST: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAG GTTCATCACAAAGAAGTA
genomic: GCTGGAACAAATTGGTTAATGTTTGAGTTGCTGTGGAGAGATTTCTTCAGgtatgtacca ... aatatgtcagGTTCATCACAAAGAAGTA
aataattaatgatcaaaccgatgaattgtaactgatgattaatgaaatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACTGGCTGCACTCCCGCCCCAGCGCTTGCATGAACTTACTTAGACAAGCTG
atgattaatgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggaagatgtatagttatactaatcttcaatgtggtctgaactgaataattaatgatcaaaccgatgaattgtaactgatgattaatgaaatatgtcagGTTCATCACAAAGAAGTACAGCTCTGTACAGAAGACATCTGAAGTTGCCACTGGCTGCACTCCCGCCCCAGCGCTTGCATGAACTTACTTAGACAAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - caatgtg
- - - - - - - - - - - - - - - - - - - tgaactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgat