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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctaagcataccttcgccttcaaatttgcgtagcttcgtttttattctgcaagttgtttggtctatcgttcaaatgccttattattctgcgagctgttttaagactgggcctcaatttttttccagGCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCCTTGCCAATAAG

Basic information

species Zea mays
transcript GRMZM2G158584_T04
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149103360|gb|EE288742.2|EE288742
EST:     CAACAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATG                         GCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC
genomic: CAACAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATGgtcagctaag ... ttttttccagGCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC
EST: gi|149028385|gb|EE154636.2|EE154636
EST:     CAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATG                         GCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC
genomic: CAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATGgtcagctaag ... ttttttccagGCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC
EST: gi|29544577|gb|CB604957.1|CB604957
EST:     GACATGAGCAACAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATG                         GCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC
genomic: GACATGAGCAACAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATGgtcagctaag ... ttttttccagGCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC
EST: gi|30087079|gb|CB885287.1|CB885287
EST:     GACATGAGCAACAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATG                         GCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC
genomic: GACATGAGCAACAGATCCCGCTCCATGGGCTGAAACTGGGATTCGTGATGgtcagctaag ... ttttttccagGCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgccttattattctgcgagctgttttaagactgggcctcaatttttttccagGCAGAAAGTGCTACTGTCGCTCTCAATTGTAGCGGTGTGGTACTGGGATCCTTGCCAATAAG
                                      cctcaatttttttcc  CT-rich tract
                                        tcaattttttt  TA-rich tract