1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...accccccaaaaatgtcatgtgtactttggaaaaatgagagtttatgatttttctggcaaattttcttggatgtgcaaatgatggtttcgtttgtttgcagATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGTAATTTTTTTCCTCTCAGCAAGCTTATTATTGTTATATTCTTCCCAATCTCC
species | Zea mays |
transcript | GRMZM2G158261_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGATCAAGAGGATTCGTAATGGGCAG ATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGTAAEST: gi|211188056|gb|FK976791.1|FK976791
genomic: GTGGATCAAGAGGATTCGTAATGGGCAGgtagggaaaa ... ttgtttgcagATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGTAA
EST: GTGGATCAAGAGGATTCGTAATGGGCAG ATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGEST: gi|211294548|gb|FL391458.1|FL391458
genomic: GTGGATCAAGAGGATTCGTAATGGGCAGgtagggaaaa ... ttgtttgcagATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTG
EST: GTGGATCAAGAGGATTCGTAATGGGCAG ATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGTAA
genomic: GTGGATCAAGAGGATTCGTAATGGGCAGgtagggaaaa ... ttgtttgcagATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGTAA
gatttttctggcaaattttcttggatgtgcaaatgatggtttcgtttgtttgcagATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGTAATTTTTTTCCTCTCAGCAAGCTTATTATTGTTATATTCTTCCCAATCTCC
tttcgttt CT-rich tract
aaattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accccccaaaaatgtcatgtgtactttggaaaaatgagagtttatgatttttctggcaaattttcttggatgtgcaaatgatggtttcgtttgtttgcagATAACCGTTGATGGTGAAGTTGTCACTGATCCAGATATGACTCTGGTGTAATTTTTTTCCTCTCAGCAAGCTTATTATTGTTATATTCTTCCCAATCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT