1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgacatgtggatatgcaaattatttactgtacctgtatgaactgacttcctatatggtactgatcagtacttaatgataataacatgtatctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGATGAGGCCATCCTTAGGCGCTTTACTCAGATATTTGAAATTGGAATTCC
species | Zea mays |
transcript | GRMZM2G158136_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATATGAAGACAGAAGT-CATGTCCCTCTGGGATGGCTTCAC-ACCGACC AGAATGCTCGTGTAATGGTCCTGGCTGCTANCAA-CAGGCCTTCTGAGCTAEST: gi|148961917|gb|EE012707.2|EE012707
genomic: AATATGAAGACAGA-GTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTA-CAAACAGGCCTTCTGAGCTA
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCAC-ACCGACC AGAACGCTCGTGTAAEST: gi|78081860|gb|DV510272.1|DV510272
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAA
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|211461323|gb|FL283286.1|FL283286
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAATGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|148949884|gb|EC895380.2|EC895380
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|74244276|gb|DT652190.1|DT652190
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|78121665|gb|DV540049.1|DV540049
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|93283899|gb|EB676163.1|EB676163
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|148954924|gb|EC900412.2|EC900412
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAAEST: gi|149077190|gb|EE165854.2|EE165854
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAA
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|76923334|gb|DV169435.1|DV169435
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|78075677|gb|DV504111.1|DV504111
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|71299644|gb|DR785830.1|DR785830
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: GAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|149089069|gb|EE178236.2|EE178236
genomic: GAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGNTA-TGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAEST: gi|31354032|gb|CD438389.1|CD438389
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTG-TAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTA
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACTGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGEST: gi|71299646|gb|DR785831.1|DR785831
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|148941166|gb|EC886045.2|EC886045
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGEST: gi|148961232|gb|EE011948.2|EE011948
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|93012345|gb|EB637865.1|EB637865
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: AATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCCTCCCCCACCGACC AGAACGCTCGTGTAATGGTCCTGEST: gi|148940585|gb|EC885389.2|EC885389
genomic: AATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACC-ACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|148960540|gb|EE011147.2|EE011147
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCCCCACCGACC AGAACGCTCGTGTAAEST: gi|149017489|gb|EE045689.2|EE045689
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAA
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAEST: gi|148944282|gb|EC889378.2|EC889378
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAA
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGEST: gi|91053937|gb|EB164355.1|EB164355
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
EST: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACC AGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
genomic: TAATATGAAGACAGAGTTCATGTCCCTCTGGGATGGCTTCACCACCGACCgtgagtcctc ... ctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAG
cttcctatatggtactgatcagtacttaatgataataacatgtatctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGATGAGGCCATCCTTAGGCGCTTTACTCAGATATTTGAAATTGGAATTCC
taataac putative branch site (score: 83)
tatctcttttc putative PPT
tacttaatgataataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacatgtggatatgcaaattatttactgtacctgtatgaactgacttcctatatggtactgatcagtacttaatgataataacatgtatctcttttcagAGAACGCTCGTGTAATGGTCCTGGCTGCTACAAACAGGCCTTCTGAGCTAGATGAGGCCATCCTTAGGCGCTTTACTCAGATATTTGAAATTGGAATTCC
- -catgtgg
- - - - - -tatgcaa
- - - - - - - - - - - tttactg
- - - - - - - - - - - - - - - - ctgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtat