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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatattagatctaatttttattctgtaccaataatcatggatgtacactctgttatcttattgtcttccttgtgaccttggtcgcctcgactgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG

Basic information

species Zea mays
transcript GRMZM2G158097_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 3'ss of exon 3
aatattagatctaatttttattctgtaccaataatcatggatgtacactctgttatcttattgtcttccttgtga-ccttggtcgcctcgactgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG
  |||  | |||||  |||||| |||||||| || ||| |    ||||| | |||| || | ||| |||||   | ||||| |  ||| |||| |||||||||||| || ||||||||| | ||| ||||||||||||||||||||| |  | |  | |||||||| ||||||||||| |||||
tctatatgctctaacctttattttgtaccaacaagcatagtgccacact-tattatgttttggtcctccttaaaaaccttgatgtccttgacttatttcagGAAACAGGGTGGTTACCTCTGCATGTTGTTGCACGGGATGAGAATGAAACTGTCGTTGGTGTTGTCCCACTTTACCTGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76922721|gb|DV169140.1|DV169140
EST:     TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAG                         GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
genomic: TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAGgtaagcacat ... ctgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
EST: gi|89761707|gb|DY689615.1|DY689615
EST:     TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAG                         GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
genomic: TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAGgtaagcacat ... ctgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
EST: gi|71766887|gb|DR964824.1|DR964824
EST:     TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAG                         GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
genomic: TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAGgtaagcacat ... ctgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
EST: gi|78092697|gb|DV521071.1|DV521071
EST:     TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAG                         GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
genomic: TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAGgtaagcacat ... ctgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
EST: gi|50325272|gb|CO520398.1|CO520398
EST:     TTACTTATGCATTCCTCTCAAGCTTACAAGAATCAGGTTCTGCGGTCAAG                         GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
genomic: TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAGgtaagcacat ... ctgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
EST: gi|71318422|gb|DR795977.1|DR795977
EST:     TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAG                         GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
genomic: TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAGgtaagcacat ... ctgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
EST: gi|91873363|gb|EB403320.1|EB403320
EST:     TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAG                         GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT
genomic: TTACTTATGCATTCCTCTCAAGCTTAGAAGAATCAGGTTCTGCGGTCAAGgtaagcacat ... ctgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cactctgttatcttattgtcttccttgtgaccttggtcgcctcgactgatttcagGAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG
                                           gactgat  putative branch site (score: 3)
       ttatcttatt  TA-rich tract