1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattgcgagcagtaagaaagaataatccatcctaacattcaaccattttaccttacatcttgtaagctttgagcttttagATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCTGTACTGCTGGTATTGAACAAGAAAGATCTCATAAAACCCGGAGAAATCG
species | Zea mays |
transcript | GRMZM2G158024_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAG ATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCTEST: gi|76287840|gb|DV027408.1|DV027408
genomic: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAGgtattgcgag ... gagcttttagATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCT
EST: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAG ATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCTEST: gi|149086134|gb|EE175674.2|EE175674
genomic: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAGgtattgcgag ... gagcttttagATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCT
EST: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAG ATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCTEST: gi|74240633|gb|DT648547.1|DT648547
genomic: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAGgtattgcgag ... gagcttttagATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCT
EST: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAG ATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCT
genomic: GTGCGGACTGTGTGCTTGTTGTTGCTGATGCTTGCAAAACTCCTGAAAAGgtattgcgag ... gagcttttagATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCT
tccatcctaacattcaaccattttaccttacatcttgtaagctttgagcttttagATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCTGTACTGCTGGTATTGAACAAGAAAGATCTCATAAAACCCGGAGAAATCG
ctttt CT-rich tract
atttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcgagcagtaagaaagaataatccatcctaacattcaaccattttaccttacatcttgtaagctttgagcttttagATTGATGAAATGCTTGAAGAAGGTGTTGGAAACAAAGATATTGGACTTCCTGTACTGCTGGTATTGAACAAGAAAGATCTCATAAAACCCGGAGAAATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA