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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatgtcatatgtgtaaagtgaatttgttggtgggctctagttcactaatttgttgtatttactaatgtaccgttgcttacagcttgttatcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG

Basic information

species Zea mays
transcript GRMZM2G157836_T07
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157836_T03 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 3'ss of exon 2
tatatgtcatatgtgtaaagtgaatttgttggtgggctctagttcactaatttgttgtatttactaatgtaccg-ttgcttacagcttgttatcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG
||  |  |  | | ||    | |  | | |     |   | || |   | ||| ||| | |   ||||  |  | || ||| || | |  | ||||  ||||||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||
tagctagctgacg-gtgggattagatggattacttgtgatggtccttgactttcttggagtaggtaattcattgctttcttgcaaccttctgtcttcctagGTTGCTTGGGCATTGTTGATGGAGATGATGTTGAGCTTAATAACCTTCACCGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087902|gb|DV516295.1|DV516295
EST:     TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG                         GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
EST: gi|101400847|gb|EB822121.1|EB822121
EST:     TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG                         GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTT
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTT
EST: gi|71445496|gb|DR826546.1|DR826546
EST:     TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG                         GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC
genomic: TGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCGgtaattttct ... atcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaatttgttgtatttactaatgtaccgttgcttacagcttgttatcttattagGTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG
                                           ttatctt  CT-rich tract
         ttgtatttactaat  TA-rich tract