Sequence
atgc intronic sequence ATGC exonic sequence...tccgatgtgtcatcacaatcgcagcatattgctggggaaaacggtgcagttagcacgctcgtttcggctgatcctctgacctttgtcatctgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G157836_T05 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 3'ss of exon 1
tccgatgtgtcatcacaatcgcagcatattgctggggaaaacggtgcagttagcacgctcgtttcggctgatcctctgaccttt-gtcatctgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG
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-------------gttaagctcagc-tgctcacacatggcgcgttatcgt-agcctcagcgtagtggagactctagtgactttttgttagctatgtcgcagGCCAGCGTAAGCTCTCGCAGTCATCGATTTTGGTGGTGGGCGCTGGAGGATTGGGCTCGCCCGTGGCACTGTACCTAGCAGCTTGTGGTGTTG
upper sequence: GRMZM2G157836_T05 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA14G02260.1 (Glycine max), 3'ss of exon 1
tccgatgt-gtcatcacaatcgcagcatattgctggggaaaacggtgcagttagcacgctcgtttcggctgatcctctgacctttgtcatctgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG
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cgaaaaatagacatcagacaaatagccc-ttatctgcatgtttgtcttgttttttttttttgtcttaaattttcccaccttcttgtgtttgtggagtgcagGGCAGGCAAATCTATTGAAGTCGTCAATCTTAGTTGTGGGAGCTGGAGGTTTGGGTGCACCTGCATTGTTATACTTTGCAGCTTCTGGTGTTG
upper sequence: GRMZM2G157836_T05 (Zea mays), 3'ss of exon 2
lower sequence: Vv19s0090g01020.t01 (Vitis vinifera), 3'ss of exon 1
tccgatgtgtcatcacaatcgcagcatattgctggg-gaaaacggtgcagttagcacgct-cgtttcggctgatcctctgacctttgtcatctgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG
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agcaatcaataatctactttattctatataattagttgtcatttgtttattctgattggtatctctttactttccaattggtatttgtggttggct--gtagGGCAGTCGAGTCTCTTGAAGTCTTCAATTTTAGTTGTTGGAGCTGGAGGATTGGGCGCACCAGCTCTTTTATATCTTGCGGCATGTGGAGTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcagttagcacgctcgtttcggctgatcctctgacctttgtcatctgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG
ctctgac putative branch site (score: 3)
tctgtct putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tccgatgtgtcatcacaatcgcagcatattgctggggaaaacggtgcagttagcacgctcgtttcggctgatcctctgacctttgtcatctgtctggcagGCCAGCGGAAGCTGTCACAGTCGTCGATTTTAGTTGTTGGAGCTGGAGGTTTGGGCTCTCCCCTGGCATTGTATCTAGCAGCTTGTGGTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT