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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgtgtcagttttcttttcaaaatcctctggtacatttatttgcacatgataaagttgtcttgtttagatacctgatcacaaagcttgcctccgaacagGTCCCGGAATTGGTCAGCAATCCATATGCACAAAAGAAGCGATGCCTGCGGAGAACATTGACAGGTCCCTGGTAACTGAGTTGTTGTTGATCGGACTCGA

Basic information

species Zea mays
transcript GRMZM2G157722_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157722_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g36790.1 (Oryza sativa), 3'ss of exon 3
---catgtgtcagttttcttttcaaaatcctctggtacatttatttgcacatgataaagttgtcttgtttagatacctgatcacaaagcttgcctccgaacagGTCCCGGAATTGGTCAGCAATCCATATGCACAAAAGAAGCGATGCCTGCGGAGAACATTGACAGGTCCCTGGTAA---CTGAGTTGTTGTTGATCGGACTCGA
   |||        || |||||||       ||  |  || ||  ||||  |   ||  || |||||||||| ||  |||| ||   | ||     | | |||||    ||   ||||| |||||| || | |||||||||||| |||||  | ||||||||||||||||||||||||    |||||| ||| | | ||||     
ttacatccacactcttccttttcaggtcttactattgtatctacatgcaatt--caattttatcttgtttaggtaa-tgattactctgattcatggcaagcagGTATTAGAGGCGGTCAACAATCCTTACGGACAAAAGAAGCGTTGCCTAAGAAGAACATTGACAGGTCCCTGGTAAAATTTGAGTTATTGATAACCGGAGC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76290889|gb|DV030457.1|DV030457
EST:     GAACAAATAATGGAGATGCAGCAAAACCAG                         GTCCCGGAATTGGTCAGCAATCCATATGCACAAAAGAAGCGATGCCTGCGG
genomic: GAACAAATAATGGAGATGCAGCAAAACCAGgtagattttt ... ctccgaacagGTCCCGGAATTGGTCAGCAATCCATATGCACAAAAGAAGCGATGCCTGCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatgataaagttgtcttgtttagatacctgatcacaaagcttgcctccgaacagGTCCCGGAATTGGTCAGCAATCCATATGCACAAAAGAAGCGATGCCTGCGGAGAACATTGACAGGTCCCTGGTAACTGAGTTGTTGTTGATCGGACTCGA
                          acctgat  putative branch site (score: 4)
                                        cttgcctcc  putative PPT
     ataaagtt  TA-rich tract