1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcgttatttttattgcacatgcttatcattacatgtactaaaactgatgaataatagcttcgactataatatctgtaactcatccttttcttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGGGTATGTCACATT
species | Zea mays |
transcript | GRMZM2G157332_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCCTAAATTG GTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAAATTGTGAACCGCTTGEST: gi|211490912|gb|FK946181.1|FK946181
genomic: GACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCC-TAAATTGgtgagagctc ... ttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTG
EST: AGACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCTAAATTG GTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGEST: gi|60399482|gb|DN232294.1|DN232294
genomic: AGACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCTAAATTGgtgagagctc ... ttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTG
EST: AGACGCCTTCAATGGATGTGGGCCAAGTTGGTTTTCACAACCCTAAATTG GTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGEST: gi|32824357|gb|CD964079.1|CD964079
genomic: AGACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCTAAATTGgtgagagctc ... ttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTG
EST: AGACGCCTTCAATGGATGTGGGCCAAGTTGGTTTTCACAACCCTAAATTG GTTCGCACTATTAEST: gi|32910716|gb|CF015528.1|CF015528
genomic: AGACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCTAAATTGgtgagagctc ... ttttttgaagGTTCGCACTATTA
EST: AGACGCCTTCAATGGATGTGGGCCAAGTTGGTTTTCACAATCCTAAATTG GTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTG
genomic: AGACCCCTTCAATGGATGTAGGCCAAGTTGGTTTTCACAACCCTAAATTGgtgagagctc ... ttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTG
gatgaataatagcttcgactataatatctgtaactcatccttttcttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGGGTATGTCACATT
ctgtaac putative branch site (score: 3)
taactcatccttttct CT-rich tract
tataatatctgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgttatttttattgcacatgcttatcattacatgtactaaaactgatgaataatagcttcgactataatatctgtaactcatccttttcttttttgaagGTTCGCACTATTAAAGTGGAAAAGAGGATCAATGAGATTGTGAACCGCTTGAATAAGACAAAGGTGGAACGGAAACCTGATTTAAAGGGTATGTCACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA