1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttgctaaattagttaagttttgcaaaaggttccaaatataacactacttctgaacaattatgatatgatgcttgttcattttttccatttgactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG
species | Zea mays |
transcript | GRMZM2G157316_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|76281436|gb|DV021004.1|DV021004
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71305646|gb|DR788962.1|DR788962
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTT-GTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71448463|gb|DR829513.1|DR829513
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|93014294|gb|EB639814.1|EB639814
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|149102614|gb|EE188245.2|EE188245
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71305918|gb|DR789090.1|DR789090
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|93013209|gb|EB638729.1|EB638729
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|148999432|gb|EE036384.2|EE036384
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|74237515|gb|DT645429.1|DT645429
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|50336165|gb|CO531291.1|CO531291
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|93013635|gb|EB639155.1|EB639155
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|149080963|gb|EE170059.2|EE170059
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|149105307|gb|EE290799.2|EE290799
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|86470247|gb|DY236617.1|DY236617
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCTCTATCACAGCATCATCGCTCCTCGAGATCCTGTCAEST: gi|71327756|gb|DR800512.1|DR800512
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GNNNNNNNGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCEST: gi|89762002|gb|DY689797.1|DY689797
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTT-GTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTC
EST: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTTGTCTCTTCCCTATCACAGCATCATCGCTCCTCGAGATCCTGTCC
genomic: TGTATTACTTCCGTGTGTTTGAGAGGCAGATAGGCTCTAACAAATACTCGgtaggtactt ... gactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCA
acttctgaacaattatgatatgatgcttgttcattttttccatttgactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG
atttgac putative branch site (score: 4)
aacaattatgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgctaaattagttaagttttgcaaaaggttccaaatataacactacttctgaacaattatgatatgatgcttgttcattttttccatttgactgtgcagGTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC