1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atttggcttaaagttttaatgcaacatgaagtcatcaactctatatattttcaacagcaggagctgaatcacttacaattgaagttgttgtgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCTATCACAAAATCTGTCTCTGATGCCGCAATTGCTTTCAGAGAGGGTGTG
species | Zea mays |
transcript | GRMZM2G157310_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|101386461|gb|EB815247.1|EB815247
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|5268576|gb|AI770540.1|AI770540
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|76293679|gb|DV033247.1|DV033247
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|101385767|gb|EB814932.1|EB814932
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|9951997|gb|BE638580.1|BE638580
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCEST: gi|74242168|gb|DT650082.1|DT650082
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|78092209|gb|DV520583.1|DV520583
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|211095811|gb|FL316687.1|FL316687
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGACAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|211143628|gb|FL314871.1|FL314871
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGACAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|91048046|gb|EB158464.1|EB158464
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|91877197|gb|EB407154.1|EB407154
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|91050984|gb|EB161402.1|EB161402
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|211118716|gb|FL311656.1|FL311656
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|31354764|gb|CD439121.1|CD439121
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|71438827|gb|DR819877.1|DR819877
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|50333544|gb|CO528670.1|CO528670
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCEST: gi|71449422|gb|DR830472.1|DR830472
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
EST: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATG GTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
genomic: ATCTGCCCCGACATCCCACTCTCGGAGAAGGCCAAGCTCATGGAAGAATGgtactacgtt ... tgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGC
tattttcaacagcaggagctgaatcacttacaattgaagttgttgtgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCTATCACAAAATCTGTCTCTGATGCCGCAATTGCTTTCAGAGAGGGTGTG
cacttac putative branch site (score: 70)
ttacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttggcttaaagttttaatgcaacatgaagtcatcaactctatatattttcaacagcaggagctgaatcacttacaattgaagttgttgtgtgctacagGTGGGAGAAGACTCATGGTCTTCTTATTGAAGGCGGTCTTACATACGAAGCTATCACAAAATCTGTCTCTGATGCCGCAATTGCTTTCAGAGAGGGTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - -aatgcaa
- - - - - - - - - - - - catgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - aacagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg