Sequence
atgc intronic sequence ATGC exonic sequencegttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcagGTTGTTGTTGTTACTGTTGTGTTTCCTGCGACACCTCTTCTTCTTGCTAGGGCACGCATATGCATTTCTGCTTCACATACTAGGGAGCACCTGATTAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G157249_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 3'ss of exon 10
gttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggt--ttcgttcttcctatctgtcatggtacttataagatacttatctttcagGTTGTTGTTGTTACTGTTGTGTTTCCTGCGACACCTCTTCTTCTTGCTAGGGCACGCATATGCATTTCTGCTTCACATACTAGGGAGCACCTGATTAAAG
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--------------------------------------------------------------------------------gttagtaatggtatagaatgctatttatcttcagaa-atggtacagaataatggtttttgccagttttttgtcgttccctagcccctattaccgtgcgactgatgtggcactggcatttcagGTTGCTGTTGTCACTGTGGCATTCCCTGCCACACCTCTGCTCCTTGCAAGGGCGCGCATCTGCATTTCTGCTTCGCACACTAGGGAGGACCTGATAAAAG
upper sequence: GRMZM2G157249_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 3'ss of exon 11
gttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccat--cactatttgc-acccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcagGTTGTTGTTGTTACTGTTGTGTTTCCTGCGACACCTCTTCTTCTTGCTAGGGCACGCATATGCATTTCTGCTTCACATACTAGGGAGCACCTGATTAAAG
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----------------------gtaagctttatctttaattt---ctatacattcaccattcatgtctttt----cattcttgatt--aaagtagctgcaata-cagagat-tccaagtcattcatttgtatagcactgctcattaatctccagttcaagttcacttgtgtggc-tagtattgacaagttatgc-tgttccagGTTGCTGTTGTGACAGTTGCTTTTCCAGCTACTCCACTTCTTTTGGCCAGGGCACGGATCTGCATTTCTGCTTCTCATACCAGGGAAGACCTGATTAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcagGTTGTTGTTGTTACTGTTGTGTTTCCTGCGACACCTCTTCTTCTTGCTAGGGCACGCATATGCATTTCTGCTTCACATACTAGGGAGCACCTGATTAAAG
cttatctttc CT-rich tract
ttataagatacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtagtagagttcgtcagaatattctgaagatccaaatagcactatgcttttggtatacttttttcttaaaaaatactttgtttgagaattgtggtgctaatagcaatctgcatgtagtccatatccatcactatttgcacccactggtttcgttcttcctatctgtcatggtacttataagatacttatctttcagGTTGTTGTTGTTACTGTTGTGTTTCCTGCGACACCTCTTCTTCTTGCTAGGGCACGCATATGCATTTCTGCTTCACATACTAGGGAGCACCTGATTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA