1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatgctaatcaagcttccacatatttgattgtcagttatatctatatttccatttcgagagggtgttcccattgattttatcttgcctgtaacattgcagGGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTGCTGCAAGGGGGCTCGAGTACCTTCACGGAGCTGAGAGATCCATCATTTA
species | Zea mays |
transcript | GRMZM2G157115_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTCTATGAGTACATGGCTTGTGGAAGCCTCGAAAAGCACCTTTTTCGCC GGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTGEST: gi|38502693|gb|CF972553.1|CF972553
genomic: TGTCTATGAGTACATGGCTTGTGGAAGCCTCGAAAAGCACCTTTTTCGCCgtaagctcta ... aacattgcagGGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTG
EST: TGTCTATGAGTACATGGCTTGTGGAAGCCTCGAAAAGCACCTTTTTCGCC GGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTGEST: gi|211291145|gb|FL439240.1|FL439240
genomic: TGTCTATGAGTACATGGCTTGTGGAAGCCTCGAAAAGCACCTTTTTCGCCgtaagctcta ... aacattgcagGGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTG
EST: TGTCTATGAGTACATGGCTTGTGGAAGCCTCGAAAAGCACCTTTTTCGCC GGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTG
genomic: TGTCTATGAGTACATGGCTTGTGGAAGCCTCGAAAAGCACCTTTTTCGCCgtaagctcta ... aacattgcagGGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTG
atttccatttcgagagggtgttcccattgattttatcttgcctgtaacattgcagGGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTGCTGCAAGGGGGCTCGAGTACCTTCACGGAGCTGAGAGATCCATCATTTA
ctgtaac putative branch site (score: 110)
attgattttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgctaatcaagcttccacatatttgattgtcagttatatctatatttccatttcgagagggtgttcccattgattttatcttgcctgtaacattgcagGGGTTTGCCTTAATATGCCATGGTCAACACGCATGAAGATTGCATTGGGTGCTGCAAGGGGGCTCGAGTACCTTCACGGAGCTGAGAGATCCATCATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
-atgctaa
- - - - - - gcttcca
- - - - - - - - - - - - ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgt