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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcaagcttgtttcttcttttcttttcttttcccttctcttgtcagattaatcaggcaaaaatcagtcgtgcctttcttacacagAGGCAAGTTGGATTCTGGAAATCGTCAGAGTCAATGGTCGATCACAAAG

Basic information

species Zea mays
transcript GRMZM2G156956_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156956_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g01240.3 (Oryza sativa), 3'ss of exon 1
---------gttagcaagcttg------tttcttcttttcttttcttttcccttctcttgtcagat--taatcaggcaaaaatcagtcgtgcctttctt--acacagAGGCAAGTTGGATTCTGGAAATCGTCAGAGTCAATGGTCGATCACAAAG
          | | ||| |  |       | || | |  |  |  |||    || |  ||  |||   ||      |||  ||    | | || | |||     ||||||||||||||||| ||||| ||   |||||||||||| ||||||||||
gtactagtaataaacaaaccagaaaaccatcctgcctgccactgatttctttttattctgcaagactgtagcacctcaattattttcccttccatgcttcattgcagAGGCAAGTTGGATTTTGGAATTC---AGAGTCAATGGTGGATCACAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcccttctcttgtcagattaatcaggcaaaaatcagtcgtgcctttcttacacagAGGCAAGTTGGATTCTGGAAATCGTCAGAGTCAATGGTCGATCACAAAG
                                            ttcttac  putative branch site (score: 2)
                                       tgcctttctt  CT-rich tract
              agattaat  TA-rich tract