Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttatcagctaaccttttttccttctatcctgacgtttatgtgagttgtatttctgtgtgattatcaaaaagctttgcctttgtacatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGAATATTGGCAATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTAT

Basic information

species Zea mays
transcript GRMZM2G156734_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156734_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g36740.4 (Oryza sativa), 3'ss of exon 4
----gt-ttgttatcagctaaccttttttccttctatcctgacgtttatgtgagttgtatttctgtgtgattatcaaaaagctttgcctttgtacatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGAATATTGGCAATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTAT
    || |  | ||     ||   | ||   |  ||||||     || ||||| |   ||||||| |||| ||| ||| |      |||  | |||     |||  ||| ||     | || ||||  | | |  |  | || || ||| ||||||||||| | ||||||||||| || ||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||| || |||
gttggtatcttcattcatgaaaaatcttctttcgtatcctagtacttttgtgaataa-atttctgagtgaatataaaataatc---cctaagcaca-----attcttaacttc----tcgtgtctctatctcg--tcctattctccagTAGTGGAGATTGGTCTATCTCTGGCAATCGGTTGGATTTACATGATCCTAGAATCTTGGCTATGGCTGCCGCTCAACACCGTTTACTTGAAGATGAGTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33101150|gb|CF061110.1|CF061110
EST:     GCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: GCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|76909618|gb|DV163452.1|DV163452
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|31558678|gb|CD527890.1|CD527890
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|71332393|gb|DR803153.1|DR803153
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGAAACCGTTTGGATTTACTTGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|78545094|gb|DV622592.1|DV622592
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTTGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|6031346|gb|AW076203.1|AW076203
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32924962|gb|CF029774.1|CF029774
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|29130457|gb|CB381161.1|CB381161
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32924741|gb|CF029553.1|CF029553
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|31406064|gb|CD484796.1|CD484796
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32925907|gb|CF030719.1|CF030719
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|28390336|gb|CB250165.1|CB250165
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|29130571|gb|CB381275.1|CB381275
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|78125041|gb|DV543425.1|DV543425
EST:     ATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: ATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32925165|gb|CF029977.1|CF029977
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|5325050|gb|AI783241.1|AI783241
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|78074789|gb|DV503223.1|DV503223
EST:     CATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: CATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|211448719|gb|FL094703.1|FL094703
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32926687|gb|CF031499.1|CF031499
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|28361582|gb|CB239938.1|CB239938
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGGAGATTGGACCATCTCTGGCAAACCGTTTGGATTTACATGATCCT
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGT-GGAGATTGGACCATCTCTGGC-AACCGTTTGGATTTACATGATCCT
EST: gi|32925808|gb|CF030620.1|CF030620
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|6031347|gb|AW076204.1|AW076204
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32925763|gb|CF030575.1|CF030575
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|211010477|gb|FL237651.1|FL237651
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGA
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGA
EST: gi|76013718|gb|DT940888.1|DT940888
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TCGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|22818791|gb|BU498881.1|BU498881
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|101402591|gb|EB822839.1|EB822839
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|5846862|gb|AI999945.1|AI999945
EST:     CATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAG
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|29947111|gb|CB816487.1|CB816487
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|30307008|gb|CD001681.1|CD001681
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32926380|gb|CF031192.1|CF031192
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32924716|gb|CF029528.1|CF029528
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|211010485|gb|FL237659.1|FL237659
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|32840136|gb|CD979817.1|CD979817
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: gi|76936722|gb|DV174850.1|DV174850
EST:     TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG                         TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGAATATTGGCAATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTAT
                 tttctatttgtttctc  CT-rich tract
      taatttataaatttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttgttatcagctaaccttttttccttctatcctgacgtttatgtgagttgtatttctgtgtgattatcaaaaagctttgcctttgtacatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGAATATTGGCAATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA