1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgttatcagctaaccttttttccttctatcctgacgtttatgtgagttgtatttctgtgtgattatcaaaaagctttgcctttgtacatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGAATATTGGCAATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTAT
species | Zea mays |
transcript | GRMZM2G156734_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|76909618|gb|DV163452.1|DV163452
genomic: GCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|31558678|gb|CD527890.1|CD527890
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|71332393|gb|DR803153.1|DR803153
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGAAACCGTTTGGATTTACTTGATCCTAGEST: gi|78545094|gb|DV622592.1|DV622592
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: CATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTTGATTTACATGATCCTAGEST: gi|6031346|gb|AW076203.1|AW076203
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: CATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAGEST: gi|32924962|gb|CF029774.1|CF029774
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|29130457|gb|CB381161.1|CB381161
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|32924741|gb|CF029553.1|CF029553
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|31406064|gb|CD484796.1|CD484796
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|32925907|gb|CF030719.1|CF030719
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|28390336|gb|CB250165.1|CB250165
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|29130571|gb|CB381275.1|CB381275
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|78125041|gb|DV543425.1|DV543425
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: ATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|32925165|gb|CF029977.1|CF029977
genomic: ATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|5325050|gb|AI783241.1|AI783241
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: CATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAGEST: gi|78074789|gb|DV503223.1|DV503223
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: CATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|211448719|gb|FL094703.1|FL094703
genomic: CATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|32926687|gb|CF031499.1|CF031499
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|28361582|gb|CB239938.1|CB239938
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGGAGATTGGACCATCTCTGGCAAACCGTTTGGATTTACATGATCCTEST: gi|32925808|gb|CF030620.1|CF030620
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGT-GGAGATTGGACCATCTCTGGC-AACCGTTTGGATTTACATGATCCT
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|6031347|gb|AW076204.1|AW076204
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: CATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAGEST: gi|32925763|gb|CF030575.1|CF030575
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|211010477|gb|FL237651.1|FL237651
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGAEST: gi|76013718|gb|DT940888.1|DT940888
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGA
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TCGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|22818791|gb|BU498881.1|BU498881
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|101402591|gb|EB822839.1|EB822839
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|5846862|gb|AI999945.1|AI999945
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: CATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCATTTGGATTTACATGATCCTAGEST: gi|29947111|gb|CB816487.1|CB816487
genomic: CATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|30307008|gb|CD001681.1|CD001681
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|32926380|gb|CF031192.1|CF031192
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|32924716|gb|CF029528.1|CF029528
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|211010485|gb|FL237659.1|FL237659
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|32840136|gb|CD979817.1|CD979817
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGEST: gi|76936722|gb|DV174850.1|DV174850
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
EST: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAG TGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
genomic: TACACTGCCCCAACCCAGGTGCATCATGATGAAACTACCATAGAGATAAGgtttgttatc ... ttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAG
acatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGAATATTGGCAATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTAT
tttctatttgtttctc CT-rich tract
taatttataaatttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttatcagctaaccttttttccttctatcctgacgtttatgtgagttgtatttctgtgtgattatcaaaaagctttgcctttgtacatcgtaatttataaatttctatttgtttctcatttttgcatttttttttctagTGGTGGAGATTGGACCATCTCTGGCAACCGTTTGGATTTACATGATCCTAGAATATTGGCAATGGCTGCTGCTCAACACCGTCTACTTGAAGACGACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA