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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactccttgcctaaagcccaactgatcaatttgactgtcgtagcagttttctcagcgatataactactggattaacccatgtgactgagttctaatttcttttagcttccagccatcgaagttctctctgcattacctcgttcaacttctataaatttgctggtgatgtgccctaccagGGAGCTTGCAAACCAATTGGCTGCTGAGGCCAGGAAGCTTCTCAAGTATCATCGCTCACTGGGTGTGCAGGTTGTAATAGGTGGCACACGGTTACCTCAA

Basic information

species Zea mays
transcript GRMZM2G156158_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211328610|gb|FK972861.1|FK972861
EST:     ATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTG                         GGAGCTTGCAAACCAATTGGCTGCTGAGGCCAGGAAGCTTCTCAAGTATCA
genomic: ATGTTCTTGCAAAAGCGAAGACAGGAACAGGGAAAACAGTTGCCTTTTTGgtactccttg ... gccctaccagGGAGCTTGCAAACCAATTGGCTGCTGAGGCCAGGAAGCTTCTCAAGTATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctgcattacctcgttcaacttctataaatttgctggtgatgtgccctaccagGGAGCTTGCAAACCAATTGGCTGCTGAGGCCAGGAAGCTTCTCAAGTATCATCGCTCACTGGGTGTGCAGGTTGTAATAGGTGGCACACGGTTACCTCAA
                                              ccctacc  CT-rich tract
                   aacttctataaattt  TA-rich tract