1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtgtccttaaattaagttaccccaccccacccctcttggtttgggcgctcattaatagctagctgccctcctcctggtccacggaccaccacggcgcagagtgagatctcatctttgcttgctcaaattgccgtttctgggatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATGTGCCTGCCCGGATCAGCAGGTCAGCTCCCGACCGCATTCAATTTTAAA
species | Zea mays |
transcript | GRMZM2G156019_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATEST: gi|211439400|gb|FL402881.1|FL402881
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATEST: gi|148971158|gb|EE022012.2|EE022012
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGEST: gi|76281690|gb|DV021258.1|DV021258
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCG
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATEST: gi|149096713|gb|EE182486.2|EE182486
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATEST: gi|211215269|gb|FL414788.1|FL414788
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATEST: gi|211097795|gb|FL409141.1|FL409141
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATEST: gi|211324213|gb|FL425817.1|FL425817
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
EST: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAG GGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
genomic: ACTACTGCATGCCAGGCATGACAGGATACGATCTGCTCAAGAGAGTGAAGgtgagtgtcc ... gatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAAT
gcagagtgagatctcatctttgcttgctcaaattgccgtttctgggatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATGTGCCTGCCCGGATCAGCAGGTCAGCTCCCGACCGCATTCAATTTTAAA
tcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgtccttaaattaagttaccccaccccacccctcttggtttgggcgctcattaatagctagctgccctcctcctggtccacggaccaccacggcgcagagtgagatctcatctttgcttgctcaaattgccgtttctgggatgatgcagGGGTCCTCCTCGCTCAAGGACATTCCTGTGGTGATCATGTCGTCTGAGAATGTGCCTGCCCGGATCAGCAGGTCAGCTCCCGACCGCATTCAATTTTAAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC