1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgcaaataggcaaatgagcaatattgttcctctacttattaattacgattgatgatcaatgtggcctgaaggcaaaaaaatgtttcaaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGAGTACCACTTGGAATAATGACGATGAAG
species | Zea mays |
transcript | GRMZM2G155962_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGGGAACTTGGAEST: gi|76909087|gb|DV163216.1|DV163216
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGAEST: gi|88748896|gb|DY533037.1|DY533037
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: ACCCAAACTTATGGCCATCTGGTCAAAAG ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGAEST: gi|211177494|gb|FL246403.1|FL246403
genomic: ACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
EST: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAG ATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
genomic: AATACCGTGCTGTGAGGTTCAACCCAAACTTATGGCCATCTGGTCAAAAGgtttgcaaat ... aaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGA
attacgattgatgatcaatgtggcctgaaggcaaaaaaatgtttcaaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGAGTACCACTTGGAATAATGACGATGAAG
aaaaaaatgtttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcaaataggcaaatgagcaatattgttcctctacttattaattacgattgatgatcaatgtggcctgaaggcaaaaaaatgtttcaaataaacagATGACCAATGAGGTTGGAAGGTCATTATTTTCGAAGGCAGGAGAACTTGGAGTACCACTTGGAATAATGACGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG