1 5' 3' | 2 5' 3' | 3 5' 3' |
gtctgcattacgacttaactttccccttttttttttggtatcacaattcacaattaaccaacagttttgccgacactttcatttgttttctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGCCATGGAGTAGCCTGCAAACATGCAACAAGTAAACCAGCTGAGTAACCA
species | Zea mays |
transcript | GRMZM2G155868_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|15053287|gb|BI358832.1|BI358832
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGGCTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|9733638|gb|BE512390.1|BE512390
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAEST: gi|149099397|gb|EE185437.2|EE185437
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACA
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|116813213|gb|EC855632.1|EC855632
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|16379057|gb|BI992740.1|BI992740
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|211371423|gb|FL053368.1|FL053368
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|15053297|gb|BI358842.1|BI358842
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGGCTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|32863158|gb|CF002840.1|CF002840
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGEST: gi|211191449|gb|FL473723.1|FL473723
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
EST: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAG GCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
genomic: ACTGAAAGCATAGATGTGGACTCAAAAACGAAAATGATGAACTTCTTTAGgtctgcatta ... ctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGG
aattcacaattaaccaacagttttgccgacactttcatttgttttctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGCCATGGAGTAGCCTGCAAACATGCAACAAGTAAACCAGCTGAGTAACCA
aattaac putative branch site (score: 65)
cactttcatttgtttt putative PPT
atttgttttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgcattacgacttaactttccccttttttttttggtatcacaattcacaattaaccaacagttttgccgacactttcatttgttttctttttcaagGCACACTGCTTACTTCCTTGTTGCTGGCAATGAGATGACAAGGCAACAGGGCCATGGAGTAGCCTGCAAACATGCAACAAGTAAACCAGCTGAGTAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA