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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctaggactcacttagattgctatgtggttcagtggttgtccatattatgttttatggtatgatagaaaacgctcatatactttgctatttgtttttatcaactggggacagGGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCAGTAAGTCTTCCCACCCAAGCCATTGAATTTTAGTTTTGCTTTCTTCAATTAGTGCTATGA

Basic information

species Zea mays
transcript GRMZM2G155729_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155729_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g10600.1 (Oryza sativa), 3'ss of exon 3
gtattctaggactcacttagattgctatgtggttcagtggttgtccatattatgttttatggtatgatagaaaacgctcatatactttgctatttgtttttatcaactggggacagGGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCAGTAAGTCTTCCCACCCAAGCCATTGAATTTTAGTTTTGCTTTCTTCAATTAGTGCTATGA
||| |||   |    || | |      | || ||  |      || ||      |   || | | || |  |||  |||| |||   |  |      | |   ||| |  |||||||| || ||||||||||||||||| || |||||||| ||||                                                            
gtactctcaaaactcctgaaaa----gtatgatt-ggaaaagatctatga---atcgcatagcaggaaatgaaat-ctcacatatcctctt------tctctccaatttcggacagGGAACAAGGCTTGGCAGTTCTGATCCTAAGGGATGCTTCA------------------------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgatagaaaacgctcatatactttgctatttgtttttatcaactggggacagGGGACTAGGCTTGGCAGTTCTGACCCCAAGGGATGTTTCAGTAAGTCTTCCCACCCAAGCCATTGAATTTTAGTTTTGCTTTCTTCAATTAGTGCTATGA
                             tatttgtttttatcaa  TA-rich tract