1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...acactcgtgcagtattgacgatggtgctaactggttgcagattcgcagactcggtgtttgttatcttcttttcatgaccaagtgttgaactggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA
species | Zea mays |
transcript | GRMZM2G155242_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGEST: gi|31358692|gb|CD443049.1|CD443049
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGG
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|31359517|gb|CD443874.1|CD443874
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCGACATGAACEST: gi|211032319|gb|FK948200.1|FK948200
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|31353717|gb|CD438074.1|CD438074
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211032317|gb|FK948198.1|FK948198
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|149104837|gb|EE290302.2|EE290302
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211083904|gb|FL003852.1|FL003852
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACCACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|148934898|gb|EC878944.2|EC878944
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|31350876|gb|CD435233.1|CD435233
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211037211|gb|FK948220.1|FK948220
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|149095755|gb|EE181394.2|EE181394
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211034765|gb|FK948208.1|FK948208
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: CTATAACGGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|32806992|gb|CD959226.1|CD959226
genomic: CTACAACGGGG-AGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGGGGCTGGGACATTAGCAACGTGAACEST: gi|76019942|gb|DT947112.1|DT947112
genomic: GATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211083903|gb|FL003851.1|FL003851
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|31357666|gb|CD442023.1|CD442023
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACCACATTGTGTTCAGAGGCTGGGACATTAGCAACATGAGCEST: gi|22472362|gb|BU036842.1|BU036842
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|31349014|gb|CD433371.1|CD433371
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211037210|gb|FK948219.1|FK948219
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211039659|gb|FK948234.1|FK948234
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|20208127|gb|BQ134201.1|BQ134201
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211083902|gb|FL003850.1|FL003850
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: CTACNACGGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACC-AGACGACATTGGTGTTCGGAGGEST: gi|26558443|gb|CA830678.1|CA830678
genomic: CTACAACGGGG-AGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTG-TGTTCGGAGG
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211253248|gb|FL003858.1|FL003858
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGEST: gi|211032311|gb|FK948192.1|FK948192
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGG
EST: CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211037207|gb|FK948216.1|FK948216
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211083899|gb|FL003847.1|FL003847
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: CTACCACGGGGAGGAGATCTATGCGCCCGTTCA-GAGCCTCCTTCCCATG GTTGA-CCCAGACGACATTEST: gi|211032315|gb|FK948196.1|FK948196
genomic: CTACAACGGGGAGGAGATCTATGCGCC-GTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGT-GAACCCAGACGACATT
EST: GCTATAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211034769|gb|FK948212.1|FK948212
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211083895|gb|FL003843.1|FL003843
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211253252|gb|FL003862.1|FL003862
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGAEST: gi|31359585|gb|CD443942.1|CD443942
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGA
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|149103373|gb|EE288760.2|EE288760
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211253246|gb|FL003856.1|FL003856
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: GCTACAACGGGGAAGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAAGCTGGGAEST: gi|21843169|gb|BQ703765.1|BQ703765
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGA
EST: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATA GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACEST: gi|211029842|gb|FK948182.1|FK948182
genomic: GCTACAACGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
EST: CTATAACNGGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATG GTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
genomic: CTACAAC-GGGGAGGAGATCTATGCGCCGTTCAAGAGCCTCCTTCCCATGgtaatctatt ... tggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAAC
cagactcggtgtttgttatcttcttttcatgaccaagtgttgaactggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA
ttttc CT-rich tract
tttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acactcgtgcagtattgacgatggtgctaactggttgcagattcgcagactcggtgtttgttatcttcttttcatgaccaagtgttgaactggttttcagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - -tgcagta
- - - - - - - - - - -tggtgct
- - - - - - - - - - - - - - - - -gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa