ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtaagcatacttgaaagtgttccacttctctctatatcaaattaaccatgtttatgagaatctagtttctacttttgtttcacattgttctattttggtttgtgcataactgtttttatgcatcatataaggaggatacacttttttttagattaatgatttcttttggatttcatatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCAATTATCAATTTGGTTGTTCCAGACCAGAGGTCAGGGAAG

Basic information

species	Zea mays
transcript	GRMZM2G155021_T01
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G155021_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g40570.1 (Oryza sativa), 3'ss of exon 3

gtaagcatacttgaaagtgttccacttctctctatatcaaattaaccatgtttatgagaatctagtttctacttttgtttcacattgttctattttggtttgtgcataactgtttttatgcatcatataaggaggatacacttttttttagattaatgatttcttttggatttcatatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCAATTATCAATTTGGTTGTTCCAGACCAGAGGTCAGGGAAG
                                                                         |  |  |    || |  | ||   |     |||||| ||||         |||   |  |   ||   |||  |  | | | |||| ||  |     |||  |||||| |||||||| |||||| |||| || ||||||||||| ||||||||| | ||||||||| | | |||||| ||||||||||||||||||||||||
------------------------------------------------------------------------gtaagcattcagttctctttttcctgcacacgcataa-tgtt---------catggtaatactgtagtttttcctgcataatcatgagttgatg-attttttgtatctttcagCTTTTAACAACAGTCACGGTTGATGAGTTTGGAACTCCAGGGTTGAAATCAATTCTTAGTTTGGTAGTTCCAGACCAGAGGTCAGGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211256321|gb|FL030999.1|FL030999

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|76287240|gb|DV026808.1|DV026808

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|211331694|gb|FL020929.1|FL020929

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|22521527|gb|BU080338.1|BU080338

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|13126669|gb|BG317239.1|BG317239

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGTCTAAAATC
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGG-CTAAAATC

EST: gi|71432321|gb|DR813371.1|DR813371

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|211331700|gb|FL020935.1|FL020935

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|33102963|gb|CF062923.1|CF062923

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|71425209|gb|DR806571.1|DR806571

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|211331696|gb|FL020931.1|FL020931

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|67041269|gb|CO467524.1|CO467524

EST:     TTAAGAACAAGAAATTGTCAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|21987817|gb|BQ779345.1|BQ779345

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|20512879|gb|BQ280071.1|BQ280071

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|211331704|gb|FL020939.1|FL020939

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|33102108|gb|CF062068.1|CF062068

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGCACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|101397701|gb|EB820731.1|EB820731

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|88752281|gb|DY536422.1|DY536422

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|22472298|gb|BU036778.1|BU036778

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|74244464|gb|DT652378.1|DT652378

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|211331699|gb|FL020934.1|FL020934

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|211331695|gb|FL020930.1|FL020930

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|37423435|gb|CF649445.1|CF649445

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|91874353|gb|EB404310.1|EB404310

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|67020552|gb|CO449301.1|CO449301

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|78112263|gb|DV530657.1|DV530657

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|211331701|gb|FL020936.1|FL020936

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTAACAACAATCACTGTTGATGAGTTCGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

EST: gi|33104262|gb|CF064222.1|CF064222

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTAC
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTAC

EST: gi|32907826|gb|CF012639.1|CF012639

EST:     TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGAT                         CTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA
genomic: TTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 42 (upstream exon), 45 (downstream exon)
Score: 56

CGCAGGAACAAGGAAAAATGAGTCCATCTTTGGTGAGCTTCACACCCAGATTAAGAACAAGAAATTGACAGTTGATGTCAAAGCAAACTCAGAATCAGATgtaagcatac ... tatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCAATTATCAATTTGGTTGTTCCAGACCAGAGGTCAGGGAAG

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 149

Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 80

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 145

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ggaggatacacttttttttagattaatgatttcttttggatttcatatcttccagCTTTTGACAACAATCACTGTCGATGAGTTTGGTACTCCAGGGCTAAAATCAATTATCAATTTGGTTGTTCCAGACCAGAGGTCAGGGAAG