1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...atgctaattacgccaagctgcaaagctcatgattgaaatgttccttcttagcatcttataagtgcttttcttgacaattttctcgtttttgtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCTTGTGCGGCAGCAAGCACAATTTGATTTGCTTGCAGGCCAGGCTTCAACT
species | Zea mays |
transcript | GRMZM2G154892_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCG TGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCTEST: gi|91879056|gb|EB409013.1|EB409013
genomic: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCGgtatgcttgg ... gtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCT
EST: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCC TGAAGCACAACTAGCATATAGAGCCGAAGTTTTTGAGTTACEST: gi|148960992|gb|EE011691.2|EE011691
genomic: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCGgtatgcttgg ... gtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTAC
EST: GACAATCAAGAGGCTGTGTTTGGATCAGAAGAAACCATTCTTGATATCCG TGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCTEST: gi|93282407|gb|EB674671.1|EB674671
genomic: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCGgtatgcttgg ... gtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCT
EST: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCG TGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCTEST: gi|211128081|gb|FL016613.1|FL016613
genomic: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCGgtatgcttgg ... gtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCT
EST: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCG TGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCT
genomic: GACAATCAAGAGGCTGTGTTTGGATCGGAAGAAACCATTCTTGATATCCGgtatgcttgg ... gtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCT
tcttagcatcttataagtgcttttcttgacaattttctcgtttttgtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCTTGTGCGGCAGCAAGCACAATTTGATTTGCTTGCAGGCCAGGCTTCAACT
tcttgac putative branch site (score: 95)
ttttctcgtttttgt putative PPT
atcttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctaattacgccaagctgcaaagctcatgattgaaatgttccttcttagcatcttataagtgcttttcttgacaattttctcgtttttgtacttgcagTGAAGCAAAACTAGCATATAGAGCCGAAGTTTTTGAGTTACAAAAGCAGCTTGTGCGGCAGCAAGCACAATTTGATTTGCTTGCAGGCCAGGCTTCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
atgctaa
- - - - - - - - gctgcaa
- - - - - - - - - - - - gctcatg
- - - - - - - - - - - - - - - - -tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcttt