1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cattttctaaataccagacattgcaaatctggcaaccacgctttttctatgttactgcaggtgggtctgattaactatttaaatttattgattatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTACTGGAGAAACTACTTTGAGCAGACTGATGGATTAGTTTGGGTTGTTGAT
species | Zea mays |
transcript | GRMZM2G154890_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|60337602|gb|DN204575.1|DN204575
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: GTCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|60358498|gb|DN225471.1|DN225471
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|78112616|gb|DV531010.1|DV531010
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|60345034|gb|DN212007.1|DN212007
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|76016498|gb|DT943668.1|DT943668
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|71318964|gb|DR796231.1|DR796231
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAEST: gi|5932640|gb|AW057001.1|AW057001
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCA
EST: GTCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|60345576|gb|DN212549.1|DN212549
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|78082479|gb|DV510891.1|DV510891
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|211102305|gb|FL158952.1|FL158952
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: GTCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAEST: gi|91874745|gb|EB404702.1|EB404702
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGA
EST: CAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|50335743|gb|CO530869.1|CO530869
genomic: CAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|76016499|gb|DT943669.1|DT943669
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|78114766|gb|DV533154.1|DV533154
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|60336929|gb|DN203902.1|DN203902
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: GCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|34391377|gb|CF384605.1|CF384605
genomic: GCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: GTCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|19351517|gb|BM896049.1|BM896049
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: CCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|78112615|gb|DV531009.1|DV531009
genomic: CCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|78114767|gb|DV533155.1|DV533155
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|74239326|gb|DT647240.1|DT647240
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|89755818|gb|DY686096.1|DY686096
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: TCATTAGCCCAACCCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGGTGGGAGGACAGAAGACAATCAGGTCTTEST: gi|86469538|gb|DY235908.1|DY235908
genomic: TCATTAGCCCAACCC-TTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGG-AGGACAGAAGACAATCAGGTCTT
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|60339777|gb|DN206750.1|DN206750
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: CCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTAEST: gi|71318962|gb|DR796230.1|DR796230
genomic: CCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: TAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGTTCTTAEST: gi|76286526|gb|DV026094.1|DV026094
genomic: TAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
EST: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAA ATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
genomic: ATCATTAGCCCAACCCTTGGATTCAACATCAAGACCATCAAGTACCACAAgtatgttccc ... attatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTA
tctatgttactgcaggtgggtctgattaactatttaaatttattgattatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTACTGGAGAAACTACTTTGAGCAGACTGATGGATTAGTTTGGGTTGTTGAT
tctgattaactattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattttctaaataccagacattgcaaatctggcaaccacgctttttctatgttactgcaggtgggtctgattaactatttaaatttattgattatcatagATACTCTTTGAACATATGGGATGTTGGAGGACAGAAGACAATCAGGTCTTACTGGAGAAACTACTTTGAGCAGACTGATGGATTAGTTTGGGTTGTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - cattgca
- - - - - - - - - - - - - - - - caaccac
- - - - - - - - - - - - - - - - - - - - - - - - - - -actgcag