Sequence
atgc intronic sequence ATGC exonic sequencegttgttttctgcaacagttcgaatttagaggaagcatgccatggttgacaacctctagtgtttctatacacttgatttctgtttccattacagGATTTGCCACGAACATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTTGAGGCGGTTGTTAACCGCATATGCAAGGCATAATCCATCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154883_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g17540.1 (Oryza sativa), 3'ss of exon 5
gttgttttctgcaacagttcgaatttagaggaagca-tgccatggttgacaacctctagtgtt--------------tctatacacttgatt----------tctgtttccattacagGATTTGCCACGAACATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTTGAGGCGGTTGTTAACCGCATATGCAAGGCATAATCCATCAG
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gttgctctctg-----atttgaaatgggaggaactaatgtcatgttttagaagttctactgttctaggtctctactctctacacacttgaatgcttgatttgcctgttatcattatagGATTTGCCTCGAACATTTCCGGGACACCCTGCACTAGATGAGGACGGGAGAAATGCTTTGCGACGGTTATTAACAGCATATGCAAGGCATAACCCATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32869190|gb|CF008872.1|CF008872EST: CACCCAGAAAAGTTACCCAGCCTGAGAAATGGAAAGGACAGATAGAGAAG GATTTGCCACGAACATTTCCAGGACACCCTGCAT
genomic: CACCCAGAAAAGTTACCCAGCCTGAGAAATGGAAAGGACAGATAGAGAAGgttgttttct ... tccattacagGATTTGCCACGAACATTTCCAGGACACCCTGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccatggttgacaacctctagtgtttctatacacttgatttctgtttccattacagGATTTGCCACGAACATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTTGAGGCGGTTGTTAACCGCATATGCAAGGCATAATCCATCAG
tttctgtttccatt CT-rich tract
tttctata TA-rich tract