1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgcatatttctaggattctttttacatgaccctatatctctatgccttactttattggttatctttatttttaatattcctttcatgtgcactctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTGGAAGTGATCTGCCAAGCACAACACCACCAGTTGCCTTGTCTCCTCTTG
species | Zea mays |
transcript | GRMZM2G154316_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTEST: gi|32933672|gb|CF038484.1|CF038484
genomic: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
EST: ACAAAAAATCAAAACAAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTEST: gi|22819446|gb|BU499536.1|BU499536
genomic: ACAAAAAATCAAAACAAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
EST: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTEST: gi|211367257|gb|FL208834.1|FL208834
genomic: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
EST: AAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTEST: gi|87155332|gb|DY400121.1|DY400121
genomic: AAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
EST: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTEST: gi|71316313|gb|DR794844.1|DR794844
genomic: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
EST: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTEST: gi|87156243|gb|DY401032.1|DY401032
genomic: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
EST: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTEST: gi|26558689|gb|CA830924.1|CA830924
genomic: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
EST: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAG GTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
genomic: CAGTTGTGATGAACCCACTTGTACAAAAAATCAAAACAAGCCATACTCAGgtgcatattt ... tctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTT
tactttattggttatctttatttttaatattcctttcatgtgcactctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTGGAAGTGATCTGCCAAGCACAACACCACCAGTTGCCTTGTCTCCTCTTG
ttttaat putative branch site (score: 2)
ctctgtt putative PPT
ttatctttatttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcatatttctaggattctttttacatgaccctatatctctatgccttactttattggttatctttatttttaatattcctttcatgtgcactctgttgtagGTTAAGCAAACAACAGCTACTGTTGGGGCTTCAGTTACTGTTAGCCAAGTTGGAAGTGATCTGCCAAGCACAACACCACCAGTTGCCTTGTCTCCTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC