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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacctgtaaattccagtttattcacgcttatgttgtaaacaaaaaggacaccaacaaggctatagacagctgctgtgatgcattctcacagttttttaactccagGAAACAGATTATTTGAAAATGGCTGTTGCGAAGATCAAAGCACACCAACCAAGTGTTGTATTGGTAGAGAAATCTGTGTCTCGTTATGCTCAGGATTTAT

Basic information

species Zea mays
transcript GRMZM2G153722_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153722_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g34950.1 (Oryza sativa), 3'ss of exon 3
gtattacctgtaaattccagtttattcacgcttatgttgtaaacaaaaaggacaccaacaaggc--tatagacag---------ctgct----gtgatgcattctcacagttttttaactccagGAAACAGATTATTTGAAAATGGCTGTTGCGAAGATCAAAGCACACCAACCAAGTGTTGTATTGGTAGAGAAATCTGTGTCTCGTTATGCTCAGGATTTAT
||||| ||  |||  ||     | || | || |||||||||||    |||  ||     | |||  ||||||  |          ||||    ||||||| || |||     ||||  ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
gtattgccattaatatc-----tttttatgcatatgttgtaaagccgaagttcattttaagggcggtatagattgaatgttatgttgctattggtgatgcgttgtcatgtcctttttgctccagGAAACAGATTATTTGAAAATGGCAGTTGCAAAGATCAAAGCCCACCAACCAAGTGTAGTGTTGGTAGAGAAATCTGTGTCTCGATATGCTCAGGATTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaacaaggctatagacagctgctgtgatgcattctcacagttttttaactccagGAAACAGATTATTTGAAAATGGCTGTTGCGAAGATCAAAGCACACCAACCAAGTGTTGTATTGGTAGAGAAATCTGTGTCTCGTTATGCTCAGGATTTAT
                                           ttttaac  putative branch site (score: 2)
                                         tttttt  CT-rich tract
                                       agttttttaa  TA-rich tract