1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagcagttccattcatcatccatgcaggatagccatagcatatccatctaaatagaacctgaaccttgtgaaccaaattcttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGACTTGTGCAGAGGGCCAACATGACGAAGAGGATGCTTGATGGGGATA
species | Zea mays |
transcript | GRMZM2G153393_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|40303178|gb|CK347565.1|CK347565
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|149106214|gb|EE291907.2|EE291907
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|40303248|gb|CK347635.1|CK347635
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|18177140|gb|BM378350.1|BM378350
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGATGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|32845826|gb|CD985507.1|CD985507
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCTAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|101388907|gb|EB816435.1|EB816435
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|211334695|gb|FL296071.1|FL296071
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGEST: gi|67014194|gb|CO442943.1|CO442943
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAG
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|28390198|gb|CB250095.1|CB250095
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCCCCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|211334696|gb|FL296072.1|FL296072
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCTAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|71442374|gb|DR823424.1|DR823424
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|60395662|gb|DN228532.1|DN228532
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|32838090|gb|CD977768.1|CD977768
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCTAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|32847053|gb|CD986734.1|CD986734
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCTAAATCTCTATCCCGATTTGCTGATGCCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|213182930|gb|FM185306.1|FM185306
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCTAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|211334693|gb|FL296069.1|FL296069
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|32848553|gb|CD988234.1|CD988234
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCTAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|101390185|gb|EB817025.1|EB817025
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGGGCAAGCATTGGTTEST: gi|32847233|gb|CD986914.1|CD986914
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: CAGCTAAATCTCTATCCCGATTTGCTGATGCCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTEST: gi|6095509|gb|AW120176.1|AW120176
genomic: CAGCCAAATCTCTATCCCGATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
EST: GATTTGCTGATGTCCTTGCCCTGTGTGTCCAG CCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
genomic: GATTTGCTGATGTCCTTGCCCTGTGTGTCCAGgtagcagttc ... cttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTT
atagcatatccatctaaatagaacctgaaccttgtgaaccaaattcttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGACTTGTGCAGAGGGCCAACATGACGAAGAGGATGCTTGATGGGGATA
atctaaa putative branch site (score: 3)
ttcttatt putative PPT
aaattcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcagttccattcatcatccatgcaggatagccatagcatatccatctaaatagaacctgaaccttgtgaaccaaattcttattgcagCCTGAACCAGAATTCAGGCCACCAATGTCAGAGGTGGTGCAAGCATTGGTTCGACTTGTGCAGAGGGCCAACATGACGAAGAGGATGCTTGATGGGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG