Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgaagaaagaaacgaggagagagaacatctccatcggccggcacgccaagagagtatgttgattattactcagtcgatcgcgtgttccgtgccctgcagGTACGGGCTGCCGTTCGTGTCCCCGAACAACATGCTGGTGTCGACGATCAACGGCGCGGGCGCGGCGATCGAGGCCGTGTACGTGGTGATCTTCCTGGCG

Basic information

species Zea mays
transcript GRMZM2G153358_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153358_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g35140.1 (Oryza sativa), 3'ss of exon 3
gcgaagaaagaaacgaggagagagaacatctccatcggccggcacgccaagagagtatgttgattatt--actcagtcgatcgcgtgttccgtgccctgcagGTACGGGCTGCCGTTCGTGTCCCCGAACAACATGCTGGTGTCGACGATCAACGGCGCGGGCGCGGCGATCGAGGCCGTGTACGTGGTGATCTTCCTGGCG
      |     |     |   |   |    | |      ||||    |  | |   ||   |   ||  || | | ||||  | |||   |      | |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| ||||||| | | |||||||||| | ||||| | |
--atttagtttgatttcaaacaaattcgctccgaaattttggcagaagattaaaccctgcacacggtttaacgctgccgatgccttgtgttgaattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAACGGCGCCGGCGCGGTGATCGAGACGGCGTACGTGGTGGTGTTCCTCGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149075704|gb|EE164248.2|EE164248
EST:     TCGGGGGTGCCGTACAGCATGACACTCCTCAACTGCCTCTTGTCAGCTTG                         GTACGGGCTGCCGTTCGTGTCCCCGAACAACATGCTGGTGTCGACGATCAA
genomic: TCGGGGGTGCCGTACAGCATGACACTCCTCAACTGCCTCTTGTCAGCTTGgtaagaactg ... tgccctgcagGTACGGGCTGCCGTTCGTGTCCCCGAACAACATGCTGGTGTCGACGATCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccaagagagtatgttgattattactcagtcgatcgcgtgttccgtgccctgcagGTACGGGCTGCCGTTCGTGTCCCCGAACAACATGCTGGTGTCGACGATCAACGGCGCGGGCGCGGCGATCGAGGCCGTGTACGTGGTGATCTTCCTGGCG
            tgttgat  putative branch site (score: 4)
          tatgttgattatta  TA-rich tract