1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attacagattattagatttttatcaaattcatgcgggactaaattttctttgtataactgaaggagtctgatggagtcaccttctggtggttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGCCCAAAGAAAAAACTCCTAAAAGCAAC
species | Zea mays |
transcript | GRMZM2G153087_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTEST: gi|76292992|gb|DV032560.1|DV032560
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|211265767|gb|FL248404.1|FL248404
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGA-TCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCC-AGCATATATGAGGTTGTEST: gi|76282003|gb|DV021571.1|DV021571
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: GCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|71326250|gb|DR799818.1|DR799818
genomic: GCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|211265779|gb|FL248416.1|FL248416
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|76282004|gb|DV021572.1|DV021572
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|211268204|gb|FL248420.1|FL248420
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGAEST: gi|71772104|gb|DR970041.1|DR970041
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGA
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|149014987|gb|EE044728.2|EE044728
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|78090616|gb|DV518990.1|DV518990
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|78075129|gb|DV503563.1|DV503563
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|113703593|gb|EE681097.1|EE681097
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: GGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|211268203|gb|FL248419.1|FL248419
genomic: GGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|76013927|gb|DT941097.1|DT941097
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|31357900|gb|CD442257.1|CD442257
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: GCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|71311485|gb|DR792097.1|DR792097
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|76292991|gb|DV032559.1|DV032559
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|71326247|gb|DR799817.1|DR799817
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|211265778|gb|FL248415.1|FL248415
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|211268206|gb|FL248422.1|FL248422
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|78090615|gb|DV518989.1|DV518989
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTEST: gi|211265780|gb|FL248417.1|FL248417
genomic: TCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTEST: gi|71311486|gb|DR792098.1|DR792098
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCT
EST: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAG GAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
genomic: TCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGATAAAGAATCCAGgtattccatt ... ttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGT
ttctttgtataactgaaggagtctgatggagtcaccttctggtggttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGCCCAAAGAAAAAACTCCTAAAAGCAAC
tgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacagattattagatttttatcaaattcatgcgggactaaattttctttgtataactgaaggagtctgatggagtcaccttctggtggttgcttgcagGAAACGTCTCTTCACCATGATCAATAACCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAGCCCAAAGAAAAAACTCCTAAAAGCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttctg