1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaaacttgctttgctgagcaatacgactcattctattttcttgagtgcatgctacatcaggtattgtttctgacacttgttatgttctctgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGGAATGAGTCAGGAAGAGGCAGAG
species | Zea mays |
transcript | GRMZM2G152775_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCAAGAATGGAAAGAGGEST: gi|22715386|gb|BU197734.1|BU197734
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: TCAGTCCCTCTCGAG-GGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|78544138|gb|DV621636.1|DV621636
genomic: TCAGTCCCTCTTG-GTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|22819123|gb|BU499213.1|BU499213
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCCTTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|32936732|gb|CF041551.1|CF041551
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|148952878|gb|EC898870.2|EC898870
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|21390127|gb|BQ528176.1|BQ528176
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|148946910|gb|EC892192.2|EC892192
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|26457200|gb|CA828783.1|CA828783
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGG-GGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|9742610|gb|BE518758.1|BE518758
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|21809993|gb|BQ668311.1|BQ668311
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGG-GGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|71303125|gb|DR787668.1|DR787668
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: ATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|213175464|gb|FM189533.1|FM189533
genomic: ATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|32848286|gb|CD987967.1|CD987967
genomic: CCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|148937129|gb|EC881304.2|EC881304
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: TTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|37379515|gb|CF626500.1|CF626500
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|21391153|gb|BQ529202.1|BQ529202
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|22521594|gb|BU080405.1|BU080405
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCCTTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGEST: gi|22521595|gb|BU080406.1|BU080406
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
EST: CTCAGTCCCTCTCGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAG GTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
genomic: CTCAGTCCCTCTTGGTGGAACGATCTTGAAGCAACCATTTGCAATTGGAGgtataattat ... tgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGG
gtgcatgctacatcaggtattgtttctgacacttgttatgttctctgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGGAATGAGTCAGGAAGAGGCAGAG
ttctgac putative branch site (score: 2)
tgttctct putative PPT
tattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaacttgctttgctgagcaatacgactcattctattttcttgagtgcatgctacatcaggtattgtttctgacacttgttatgttctctgaattgcagGTTCAGGTTCCAGTTACCTATATGCTCTTCTTGATCATGAATGGAAAGAGGGAATGAGTCAGGAAGAGGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG