1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacaatactatttctctttctacctgtttccatgtagcattcattagtgcttctgcaattaataggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATTACTGACCTTGTCAATGAAACCATCTTTGATGATGGTTC
species | Zea mays |
transcript | GRMZM2G152757_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCT---GA- -----A-G-AGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTEST: gi|93012264|gb|EB637784.1|EB637784
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... aggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
EST: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCT---GA- -----A-G-AGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTEST: gi|211131362|gb|FL428332.1|FL428332
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... aggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
EST: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCT---GA- -----A-G-AGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTEST: gi|149037768|gb|EE155430.2|EE155430
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... aggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
EST: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCT---GA- -----A-G-AGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTEST: gi|211027069|gb|FL381517.1|FL381517
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... aggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
EST: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG -G---A-------CTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTEST: gi|71435796|gb|DR816846.1|DR816846
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... aggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
EST: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCT---GA- -----A-G-AGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTEST: gi|50326445|gb|CO521571.1|CO521571
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... aggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
EST: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCT---GA- -----A-G-AGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... aggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTT
tctacctgtttccatgtagcattcattagtgcttctgcaattaataggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATTACTGACCTTGTCAATGAAACCATCTTTGATGATGGTTC
aattaat putative branch site (score: 3)
aattaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacaatactatttctctttctacctgtttccatgtagcattcattagtgcttctgcaattaataggcatcaagTGCTTATGTAGGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATTACTGACCTTGTCAATGAAACCATCTTTGATGATGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA