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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatactatttctctttctacctgtttccatgtagcattcattagtgcttctgcaattaataggcatcaagtgcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATTACTGACCTTGTCAATGAAACCATCTTTGATGATGGTTCATATAACATTT

Basic information

species Zea mays
transcript GRMZM2G152757_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152757_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os12g08280.1 (Oryza sativa), 3'ss of exon 3
gtaacaata--ctatttctctttctacct----gtttccatgtagcattcattagtgcttctgcaattaataggcatcaagtgcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATTACTGACCTTGTCAATGAAACCATCTTTGATGATGGTTCATATAACATTT
||||  ||   || ||||| ||||| |||    ||||| ||| |     ||  ||| |||   ||||| || || || | || || ||||||||||| || |||||||| ||||| ||||| ||||||||||| ||| |||| || || || || || ||||| ||| | ||||||||| |||| | |||||
gtaattatcatctgtttctgtttctgcctactggtttcgatggacagcgcacaagt-ctttcacaattgattgggat-atgtactcatgtagGACTCGGAAGAATTGAGGAAAGAAGGCGCAGAAGAAATTTTAGAAAATATCACCGAGCTCGTAAACGAAACTATCGTAGATGATGGTACATACAGCATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15208795|gb|BI430679.1|BI430679
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211084814|gb|FL392700.1|FL392700
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|91048113|gb|EB158531.1|EB158531
EST:     CCTTNAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211027069|gb|FL381517.1|FL381517
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211140497|gb|FL400397.1|FL400397
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCATATGAATTGAGAAAAGATGGCGCTGAACAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|91052007|gb|EB162425.1|EB162425
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATAT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATT-GAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATAT
EST: gi|211426998|gb|FL426768.1|FL426768
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|71435796|gb|DR816846.1|DR816846
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|67013898|gb|CO442647.1|CO442647
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|9731384|gb|BE510136.1|BE510136
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211225357|gb|FL370946.1|FL370946
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|50326445|gb|CO521571.1|CO521571
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|149037768|gb|EE155430.2|EE155430
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|93012264|gb|EB637784.1|EB637784
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211337258|gb|FK972906.1|FK972906
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211131362|gb|FL428332.1|FL428332
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211217102|gb|FL383485.1|FL383485
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
EST: gi|211337263|gb|FK972911.1|FK972911
EST:     CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAG                         GACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT
genomic: CCTTAAAGATGGATGTATCATCTGGACCATTTTCATTGGTGGCTGAAGAGgtaacaatac ... gcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccatgtagcattcattagtgcttctgcaattaataggcatcaagtgcttatgtagGACTCAGATGAATTGAGAAAAGATGGCGCTGAAGAAATTTTGGAAGATATTACTGACCTTGTCAATGAAACCATCTTTGATGATGGTTCATATAACATTT
                           aattaat  putative branch site (score: 3)
                           aattaata  TA-rich tract