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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcattctttcgcatcccatgcttgcctgtttaaatgattgtttgagaaactaatctgcccgcacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAAGGCCTCCAAGAGCTAGACGATATAG

Basic information

species Zea mays
transcript GRMZM2G152573_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 3
-------gtgatcattctttcgcatcc----catgcttgcctgtttaaatg---attgtttgagaaactaatctgcccgcacgcct-------cagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAAG---GCCTCCAAGAGCTAGACGATATAG
        |  ||| ||||    |||      ||| ||   | | |   ||   |||| | ||| | ||    | |        ||        || ||||| || || || ||||| || || || ||||| ||||| ||||| ||||||||||||||||| ||||| |||   || |  ||| |||      |    
gtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATTGAAGATCCAAAAGACAAAGGAAAAGCAAGCTTTGAAGGGCTGAGTTTTG---

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 3
--------gtgatca--ttctttcgcatcccatgcttgcctgtttaaatg---attgtttgagaaactaatctgcccgcacgcct--------cagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAAG---GCCTCCAAGAGCTAGACGATATAG
         |  |||  ||  || |  | | ||||||   | |     ||   |||  | ||| | ||    | |        ||         || ||||| || || || ||||| || || || ||||| ||||| ||||| ||||||||||||||||| ||||| ||    || |  ||| |||      |    
ggtttgtttttctcaattttcttagtctactatgcttaattttcattgtgcaaattagtggagtaccttgcttacttttgtctctggttctgttaGAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTCTTGAAGATCCAAAAGACAAAGGAAAAACAAGCTTTGAAGGGCTGAGTTTT----

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 3
lower sequence: AT3G28900.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgatcattctttcgcatcccat-----gcttgcctgtttaaatgattgtttgagaaactaatctgcccgcacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAAGGCC---TCCAAGAGCTAGACGATATAG
|| |   |  | |     ||  |       | |  | |||| |  ||||      |   || |||   | |  |   ||||||| || | ||||| ||||| || ||||||||||| ||||||||||| |||||| | || ||| | || || ||| |     | ||||| |||| || |   
gtaagtgtattgtaaagacctcttaaaaattggtttctttagagtattgcaactaatcttactcttttctc-tgttccagGATCGTCAGGGCCTTCTTGGTTGAAGAACAGAAGATTGTGAAGAAGGTTTTGAAGCTTCAGAAGGCGAAAGAGAAGACTGCACCAAAGAGTTAGAAGAAA---

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 3
lower sequence: PP1S200_25V6.1 (Physcomitrella patens), 3'ss of exon 3
--------------gtgatcattctttcgcatcccatgcttgcctgtttaaatgattgtttgagaaactaatctgcc-----------cgcacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAA---GGCCTCCAAGAGCTAGACGATATAG
               |  |  | | |      || |    ||    ||  ||| ||  | ||     |||||    |            |  ||   ||| || ||||| || ||| | || |||||||||||||| ||||||||||| ||||||||||| ||| | ||||| ||   |||  | |||| | |  |   |   
ttacatgtattgttatagttgtgcatgtttgccctagctgtgtgacttggaatcatcatctgtatttctaataaatcgtgatcaattttgtccgatgcagCATTATCCGAGCTTTTCTAGTTGAGGAACAGAAGATCGTGAAGAAGGTTTTGAAGATCCAGAAGTCAAAGGAGAAATTGGCTGCTAAGACCCAATCCTAA---

upper sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 3
lower sequence: PP1S2_242V6.1 (Physcomitrella patens), 3'ss of exon 3
------------gtgatcatt--ctttcgcatcccatgcttgcctgtttaaa-tga---ttgtttgagaaactaatctgc---ccgcacgcct----cagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAA--GGCCTCCAAGAGCTAGACGATATAG
             |||   ||   ||  | |||  ||  ||  |  |  ||  |||   ||| |||     || ||       ||| |    |    ||| || ||||  || ||  |  |||||||||||||||| |||||||||||  | |||||||||||  | ||||| ||  |||  | ||     || |   |   
ataaaagataacatgaatgttagtttatggatcttatcattttcaatcaaaggtgaaatttggttgtatctcttattcttaaaccgaatatgttttgcagCATTATCCAGGCTTTCCTCATCGAGGAACAGAAGATTGTGAAGAAGGTTCTAAAGATCCAAAAATCAAAGGAGAATTGGCTGCTAAAGCTCAGGCTTAAG--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9733580|gb|BE512332.1|BE512332
EST:     GTGAATCGTCCATATGGCGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGCGCCTTTTTGGTTGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211381965|gb|FL156730.1|FL156730
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGACAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211379324|gb|FL156711.1|FL156711
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|113689765|gb|DW847523.1|DW847523
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAAGGAACAGAAGATAGTGAAG
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGA-GGAACAGAAGATAGTGAAG
EST: gi|58029444|gb|CX724871.1|CX724871
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|60398264|gb|DN231080.1|DN231080
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211379336|gb|FL156723.1|FL156723
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|5006078|gb|AI712140.1|AI712140
EST:     GTGAATCGTCCATATGGCGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGCGCCTTTTTGGTTGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|5108109|gb|AI739822.1|AI739822
EST:     GTGAATCGTCCATATGGCGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGCGCCTTTTTGGTTGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211027947|gb|FK969517.1|FK969517
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211086698|gb|FL459706.1|FL459706
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|15100525|gb|BI396316.1|BI396316
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211381974|gb|FL156739.1|FL156739
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211384599|gb|FL156742.1|FL156742
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGACAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|116826752|gb|EC870573.1|EC870573
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATACATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGAT-CATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGT
EST: gi|211384597|gb|FL156740.1|FL156740
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|166675219|gb|EG147287.1|EG147287
EST:     TGGTACTGCAGTTAGGGAGAG                         GATCATTCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGT
genomic: TGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCA-TCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGT
EST: gi|60399836|gb|DN232646.1|DN232646
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|15100606|gb|BI396397.1|BI396397
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211415047|gb|FL462002.1|FL462002
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211379329|gb|FL156716.1|FL156716
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTG
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTG
EST: gi|211379335|gb|FL156722.1|FL156722
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|71445662|gb|DR826712.1|DR826712
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211379328|gb|FL156715.1|FL156715
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211086700|gb|FL459708.1|FL459708
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211379333|gb|FL156720.1|FL156720
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211492551|gb|FL462928.1|FL462928
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211381961|gb|FL156726.1|FL156726
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211086699|gb|FL459707.1|FL459707
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211379337|gb|FL156724.1|FL156724
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211379330|gb|FL156717.1|FL156717
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGG
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGG
EST: gi|211379326|gb|FL156713.1|FL156713
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAA
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAA
EST: gi|6031583|gb|AI668485.2|AI668485
EST:     GTGAATCGTCCATATGGCGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGCGCCTTTTTGGTTGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|60397406|gb|DN230222.1|DN230222
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211381962|gb|FL156727.1|FL156727
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|67017356|gb|CO446105.1|CO446105
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|67011017|gb|CO439766.1|CO439766
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|60396166|gb|DN229035.1|DN229035
EST:     GCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTAGGCCGAGGAACAGAAGATAGTGAAGAAGGTATT
genomic: GCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|166542084|gb|EG120661.1|EG120661
EST:     CTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: CTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|15079950|gb|BI388889.1|BI388889
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|211381966|gb|FL156731.1|FL156731
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
EST: gi|30705607|gb|CD058843.1|CD058843
EST:     GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAG                         GATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT
genomic: GTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtgatcattc ... cacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgcttgcctgtttaaatgattgtttgagaaactaatctgcccgcacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAAGGCCTCCAAGAGCTAGACGATATAG
                               aactaat  putative branch site (score: 2)
            tttaaatgattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatcattctttcgcatcccatgcttgcctgtttaaatgattgtttgagaaactaatctgcccgcacgcctcagGATCATCCGTGCCTTTTTGGTCGAGGAACAGAAGATAGTGAAGAAGGTGTTGAAGATCCAAAAGACCAAGGATAAGGCCTCCAAGAGCTAGACGATATAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT