1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcaaagatcgcgcgtgtttttttcttcgatctggattaaggaacagattaggcatgcgaaagctgtaacgtattacatatcattgccatccttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCG
species | Zea mays |
transcript | GRMZM2G152477_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|149107111|gb|EE189001.2|EE189001
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|50335510|gb|CO530636.1|CO530636
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|71767234|gb|DR965171.1|DR965171
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|148973087|gb|EE024151.2|EE024151
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCCGTTTCAACTCAAGTACEST: gi|149072306|gb|EE160571.2|EE160571
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCC-GTTTCAACTCAAGTAC
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|76289549|gb|DV029117.1|DV029117
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|89247687|gb|DY619473.1|DY619473
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|78087669|gb|DV516062.1|DV516062
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|32844410|gb|CD984091.1|CD984091
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTEST: gi|74239383|gb|DT647297.1|DT647297
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|37426126|gb|CF650813.1|CF650813
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|71432358|gb|DR813408.1|DR813408
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|76012119|gb|DT939289.1|DT939289
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|148943407|gb|EC888466.2|EC888466
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|32845060|gb|CD984741.1|CD984741
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTAEST: gi|71767917|gb|DR965854.1|DR965854
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTA
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|76012840|gb|DT940010.1|DT940010
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|19821796|gb|BQ047820.1|BQ047820
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATCTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|37393857|gb|CF634195.1|CF634195
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: TCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|76280616|gb|DV020184.1|DV020184
genomic: TCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|78114011|gb|DV532400.1|DV532400
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|78105515|gb|DV523933.1|DV523933
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|74245680|gb|DT653594.1|DT653594
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCEST: gi|71433301|gb|DR814351.1|DR814351
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTC
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|149014265|gb|EE043835.2|EE043835
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|149039483|gb|EE046624.2|EE046624
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|89758274|gb|DY687518.1|DY687518
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTEST: gi|17970297|gb|BM277060.1|BM277060
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
EST: GAAGATCGACAGCCGGTTCATCTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCEST: gi|148986094|gb|EE029903.2|EE029903
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACC
EST: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAG AAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
genomic: GAAGATCGACAGCCGGTTCATTTGCATCAAATCATTCGTCGTCAACGCAGgttcaaagat ... cttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACT
gattaggcatgcgaaagctgtaacgtattacatatcattgccatccttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCG
ctgtaac putative branch site (score: 106)
ccatccttct putative PPT
tattacatatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaagatcgcgcgtgtttttttcttcgatctggattaaggaacagattaggcatgcgaaagctgtaacgtattacatatcattgccatccttctactagAAATCGTGGAGTTCTTCTTCGTTGACACCACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG